DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment d and Radil

DIOPT Version :9

Sequence 1:NP_001188730.1 Gene:d / 34179 FlyBaseID:FBgn0262029 Length:1426 Species:Drosophila melanogaster
Sequence 2:XP_006504745.1 Gene:Radil / 231858 MGIID:2443088 Length:1122 Species:Mus musculus


Alignment Length:641 Identity:140/641 - (21%)
Similarity:210/641 - (32%) Gaps:177/641 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 LQRSKSSDASSSSYERTVDFFENIPD-FHGESLSTFLYSPSAEQDAQAKGDEVRLERNR-LADDD 95
            ||.|.|....||     |...|:.|. |:|..|   :.||..:...:.:...:....:| |:...
Mouse     9 LQPSPSHWLKSS-----VVIHEDAPTMFYGTQL---IMSPPTKNKLKRQSQLLSTMLSRTLSYKY 65

  Fly    96 EDQDSE--STSQSDDCED-------DDVLRLCEDFLCRHRMRPDFFCQYHKAVSSTTPSPKQTKT 151
            .|.||.  |...|||..:       ..||::..|.:|..        .::|:|.:|..|..|...
Mouse    66 RDLDSTFCSLGASDDPSELSTQLSAPGVLKVFGDSVCTG--------THYKSVLATGSSSAQELV 122

  Fly   152 STPIVQCKSASPPVKVQSDLKD-------------------FKSNRTSAVVERFAK----FSAIY 193
            ...: :..:..|....|..|.|                   |..|....:::...|    .|..:
Mouse   123 KEAL-ERYALDPECAGQYVLCDVVGQAGDSGQRWQAQCFRVFGDNEKPLLIQELWKPREGLSRRF 186

  Fly   194 TLPVPKRKKA---------CNKTTGNITDASSSNEAVHLQQRLKSLSTELVT-----------LR 238
            .|    |||:         .:.||..|      |......||:::..|..:|           ||
Mouse   187 EL----RKKSDVEELASRDVDTTTAGI------NAQARRLQRIRAKGTPALTSEAAQSSPPTRLR 241

  Fly   239 ---NRLHVGHGPGQGQSQGNGAQPVAPAPNAGPKANNFDLNASSPNLNLSSSGAGLSASAV---- 296
               :...:...|...::.....:||       |:|..:.| ...|:|.|....:....|.|    
Mouse   242 RTVSETSLSPAPSLPEAAQRPEEPV-------PEAMRYSL-YQCPHLLLLQGYSQQHDSLVYVLS 298

  Fly   297 -QQHTNGHHTTSKNHSFSHTLP---------ANSGSGGGGGAG--------GGAVVSARNTSI-- 341
             ::||.|..|.|...|.|.:.|         ....|..||.||        .||.||...:.:  
Mouse   299 KERHTVGQRTPSSKPSISLSAPDILPLHCTIRRHQSPEGGPAGTRLVLEPITGASVSVNFSEVGR 363

  Fly   342 -PHPLPHQLAEKPGLSHQQSGSGHGQS----------TGTLPHMSGM-GSIL---GQNSHSHAPV 391
             |..|.|......||.:.......||:          .|..|....| |::|   |..|...|.|
Mouse   364 NPVVLQHGDLLSLGLYYLLLFKDPGQAQPLPACALARLGAAPQSCRMCGAVLRARGAPSLPAAVV 428

  Fly   392 NNNS-------NNSNTLPMRTSNSGHLGINGGGVGHHLSHA------------HSQQLPF----I 433
            ...|       :..:||..|....    |..||..|.|:.|            |.|...|    :
Mouse   429 RRRSLLLEFEPDVEDTLLQRIMTL----IEPGGDDHKLTPAFLLCLCIQHSAMHFQPGTFRHLLL 489

  Fly   434 PQSKHTNPCQSVKTLPFGFGFSESQQKMQQQQQQGNSSPKDMQDLIHLSGPLTEHAVMRTLQARF 498
            ..||........||       .|..:|..|.|:..:.:...|.||:    |..:|.:.  ..:..
Mouse   490 KISKRVRDTVWEKT-------KELAEKQAQLQEPISWASFPMADLV----PDLQHILF--WMSNS 541

  Fly   499 NERRYF-TNVGPILL-SINPYLDV-GNPLTL---TSTRAMPLAPQLQKIVQEAVRQ 548
            .|..|| ....|:.: |:...||| |:..:|   |.|.:......|:::|..|.:|
Mouse   542 IELLYFIQQKSPLYVQSMEEELDVTGSKESLFSCTLTASEEAMAALEEVVLYAFQQ 597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dNP_001188730.1 MYSc 476..1217 CDD:214580 20/79 (25%)
MYSc_Myo20 488..1206 CDD:276847 17/67 (25%)
RadilXP_006504745.1 RA_Radil_like 79..190 CDD:340636 20/123 (16%)
FHA 302..372 CDD:366133 20/69 (29%)
Myo5p-like_CBD_Rasip1 440..807 CDD:271256 41/175 (23%)
PDZ_signaling 1021..1105 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0160
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.