DRSC/TRiP Functional Genomics Resources

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Protein Alignment prg and CG4360

DIOPT Version :10

Sequence 1:NP_609232.2 Gene:prg / 34177 FlyBaseID:FBgn0285971 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_650879.1 Gene:CG4360 / 42413 FlyBaseID:FBgn0038787 Length:556 Species:Drosophila melanogaster


Alignment Length:568 Identity:119/568 - (20%)
Similarity:171/568 - (30%) Gaps:238/568 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 GLNG--NPGVFVPEEGCIIVEVDPENLAESSEEEFALGSDGEYENYDDDDEEEEEDYDEEDEEDG 170
            |.||  .||   |..|    :..|..||...:..|||                            
  Fly    40 GSNGGSGPG---PNSG----QQQPTTLASLQQSPFAL---------------------------- 69

  Fly   171 QNGEDVDMPLGMDAAQMAAQQSVANNANTTEARPKRAFLCQYCDLGFT----------------- 218
                          .|:.|.|::.:..:.....|:.. |....|:..|                 
  Fly    70 --------------HQLTAVQAIQHPTHQAMLHPQHP-LVHLLDISTTTANSGGGGGGSHTPISP 119

  Fly   219 LPAECQ----EHELAAHDPNAPYCCNFCNIKLVTRPALISHIKTLHDPDRPYVCAHCRKGFVRRS 279
            :..|.|    |.|:...||.....|:.|..|......|.:|:| :|..:|||.|.||.|.|.:.|
  Fly   120 MKQEVQSVISEEEVVVDDPRKKKQCHVCKNKFRQLTTLRNHMK-IHTDERPYKCKHCDKAFRQIS 183

  Fly   280 DLKKHTIVHTGVRPFTCNVCSKSFSRNTNLTKHMRIH---------------------------- 316
            .|..|..:|||.:|||||:|:|.|.:.:.|..|::.|                            
  Fly   184 TLTNHVKIHTGEKPFTCNICAKDFRQQSTLINHIKTHKAAESSTPTSLLNYQPQTGSGKHRKSQM 248

  Fly   317 ------------------SG----------VKPFVCQQCPRSFQTAVEMMRHTRSHGEVKAFQCG 353
                              ||          ||||.|..|.|.|.....:..|.|:|.:.|.::|.
  Fly   249 HQAYQQQHQRVQISKTLYSGSYSSPAAEELVKPFQCSVCKRRFPQLSTLHNHERTHIDPKPYKCE 313

  Fly   354 RCPYSFSRRDKLIAHQQVHT----------RRDMEQQ---------------------------- 380
            .|..|||:...|..|:::||          .....||                            
  Fly   314 TCDKSFSQLATLANHKKIHTGDKPYTCSYCHMQFRQQSTLTNHLKTHTHQIAPGGVGGAGGGGGA 378

  Fly   381 -----------------QQM--GLIPP--------------------MEGDLQQQALQAKQKAAA 406
                             ||:  ||:|.                    ::|.....::.|  .|||
  Fly   379 VTATVDHSMPAPLAPGTQQLTSGLLPNNLHGSTANIIQLDHHPLLHFLDGSTTVSSVVA--TAAA 441

  Fly   407 QTK---------------------------NSRYYHCDVCDRTFQRERDLQRHQALHM-DSLFAC 443
            .||                           ..|.:.|.||.|.|.::..|..|...|. :..:.|
  Fly   442 NTKVEHFQAGGSPSGRMTVVGTINMLKGDNPDRPFGCSVCQRFFSQQSTLVNHIKTHTGEKPYKC 506

  Fly   444 KTCNQGFNRREQLQRH-ELEAHGPSFTCGICCISFLHQIELENHLKVH 490
            |.|...|.:...|..| ::......:.|..|...|..:..|:|||:||
  Fly   507 KICEVNFRQVATLNNHMKIHTGEKPYNCSFCPKQFRQKSTLQNHLRVH 554

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prgNP_609232.2 zf-AD 16..94 CDD:462262
COG5048 <212..340 CDD:227381 50/204 (25%)
C2H2 Zn finger 239..260 CDD:275368 6/20 (30%)
C2H2 Zn finger 268..288 CDD:275368 8/19 (42%)
C2H2 Zn finger 296..316 CDD:275368 7/19 (37%)
C2H2 Zn finger 324..344 CDD:275368 6/19 (32%)
C2H2 Zn finger 352..372 CDD:275368 7/19 (37%)
C2H2 Zn finger 416..436 CDD:275368 7/19 (37%)
C2H2 Zn finger 443..464 CDD:275368 6/21 (29%)
C2H2 Zn finger 470..490 CDD:275368 7/19 (37%)
CG4360NP_650879.1 C2H2 Zn finger 144..164 CDD:275368 6/20 (30%)
zf-H2C2_2 157..181 CDD:463886 12/24 (50%)
C2H2 Zn finger 172..192 CDD:275368 8/19 (42%)
C2H2 Zn finger 200..220 CDD:275368 7/19 (37%)
zf-C2H2_8 281..366 CDD:464935 21/84 (25%)
C2H2 Zn finger 284..304 CDD:275368 6/19 (32%)
C2H2 Zn finger 312..332 CDD:275368 7/19 (37%)
zf-H2C2_2 325..349 CDD:463886 4/23 (17%)
C2H2 Zn finger 340..360 CDD:275368 2/19 (11%)
C2H2 Zn finger 478..498 CDD:275368 7/19 (37%)
C2H2 Zn finger 506..526 CDD:275368 6/19 (32%)
zf-H2C2_2 519..543 CDD:463886 5/23 (22%)
C2H2 Zn finger 534..554 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.

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