DRSC/TRiP Functional Genomics Resources

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Protein Alignment prg and CG17801

DIOPT Version :10

Sequence 1:NP_609232.2 Gene:prg / 34177 FlyBaseID:FBgn0285971 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_650660.2 Gene:CG17801 / 42144 FlyBaseID:FBgn0038550 Length:381 Species:Drosophila melanogaster


Alignment Length:407 Identity:105/407 - (25%)
Similarity:155/407 - (38%) Gaps:95/407 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 STCRL-----CHHNTDPNSLNIFDDTVQFCKDVSIAEVSKSLWSVQYDRNECLSELICSRCLEIL 74
            |.|.|     ||.|          .|:.||.:| :|:: |.|..:..::||.....||..||..|
  Fly     8 SQCHLCASCFCHLN----------PTIIFCLEV-LAKI-KDLTGIWLEQNERQPRHICPSCLNDL 60

  Fly    75 EEAFELRKGMQ--------EREQSLQEQLKEMIKDHPKHRPGLNGNPGVFVPEEGCIIVEVDPEN 131
            ..:.:|:|.:|        .||..|.|.|:..:.|                         ::||.
  Fly    61 NTSIKLKKRIQRVHNEATLRRESGLDEDLESTVSD-------------------------IEPEG 100

  Fly   132 LAESSEEEFALGSDGEYENYDDDDEEEEEDYD-----EEDEEDGQNGEDVDMPLGMDAAQ-MAAQ 190
            .:...|.|.:..|    |||..|.:.||.|.|     |:...:..|..|.:.||...... :...
  Fly   101 DSSDLESEESYDS----ENYPFDKKAEESDIDLNLAHEDRRNEPHNPYDSETPLIFKHKNPLIET 161

  Fly   191 QSVANN--ANTTEAR-PKRA----------FLCQYCDLGFTLPAECQEHELAAHDPNAP------ 236
            .|.||.  .|..:|: ||:.          .|..|..:....|......::||.  |.|      
  Fly   162 PSFANENLPNKVDAKSPKKGNFIQIGTDLRLLTTYPSIKVVKPLALAPEDVAAE--NVPPAKRTA 224

  Fly   237 -----YCCNFCNIKLVTRPALISHIKTLHDPDRPYVCAHCRKGFVRRSDLKKHTIV-HTGVRPFT 295
                 ..|..|.....|...|.:|: ..|..::.:.|..|.|.||.:...:.|..| |.|.:||.
  Fly   225 RKMQSLVCPKCGRVFKTPYNLKTHM-VRHTGEKNFPCTFCDKRFVTKYLARLHERVRHMGEQPFE 288

  Fly   296 CNVCSKSFSRNTNLTKHMRI-HSGVKPFVCQQCPRSFQTAVEMMRHTRSHGEVKAFQCGRCPYSF 359
            ||.||.:|..:|..:.|.|| |.....:.|.||.:.|.|...:.:|...|..:|.|.|..|..:|
  Fly   289 CNFCSATFFTSTAKSSHERIRHIRDLRYQCDQCTKRFNTKTCLNKHKFLHSGLKPFDCVICQINF 353

  Fly   360 SRRDKL------IAHQQ 370
            :|:..|      :|||:
  Fly   354 ARKATLRSHFDSVAHQK 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prgNP_609232.2 zf-AD 16..94 CDD:462262 25/90 (28%)
COG5048 <212..340 CDD:227381 38/140 (27%)
C2H2 Zn finger 239..260 CDD:275368 5/20 (25%)
C2H2 Zn finger 268..288 CDD:275368 7/20 (35%)
C2H2 Zn finger 296..316 CDD:275368 9/20 (45%)
C2H2 Zn finger 324..344 CDD:275368 6/19 (32%)
C2H2 Zn finger 352..372 CDD:275368 8/25 (32%)
C2H2 Zn finger 416..436 CDD:275368
C2H2 Zn finger 443..464 CDD:275368
C2H2 Zn finger 470..490 CDD:275368
CG17801NP_650660.2 zf-AD 9..76 CDD:462262 22/78 (28%)
zf-C2H2 231..252 CDD:395048 5/21 (24%)
C2H2 Zn finger 232..252 CDD:275368 5/20 (25%)
zf-H2C2_2 244..269 CDD:463886 7/25 (28%)
C2H2 Zn finger 260..281 CDD:275368 7/20 (35%)
C2H2 Zn finger 289..308 CDD:275368 7/18 (39%)
C2H2 Zn finger 318..338 CDD:275368 6/19 (32%)
C2H2 Zn finger 346..362 CDD:275368 5/15 (33%)
Blue background indicates that the domain is not in the aligned region.

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