DRSC/TRiP Functional Genomics Resources

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Protein Alignment prg and ranshi

DIOPT Version :10

Sequence 1:NP_609232.2 Gene:prg / 34177 FlyBaseID:FBgn0285971 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster


Alignment Length:387 Identity:103/387 - (26%)
Similarity:159/387 - (41%) Gaps:78/387 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 CRLCHHNTD-PNSLNIFDDTVQFCKDVSIAEVSKSLWSVQYDRNECLSELICSRCLEILEEAFEL 80
            ||.|...|: ..|||||:.     ::.:..|..|.|..........|...:|:.|...|::|...
  Fly     6 CRTCGKRTNAERSLNIFEK-----RNQTTLEHIKLLTGAVLKNCSTLPNRLCASCQTCLQQAISF 65

  Fly    81 RKGMQEREQSL-----QEQLKEMIKDHPKHRPGLNGNPGVFVPEEGCIIVEVDPENLAESSEE-- 138
            |:...|.::.|     .|....:.::.||         .|...||    :|:|   |||.|.|  
  Fly    66 RERCLEVQRELLHSQDDEDFLRICQESPK---------SVLEQEE----LELD---LAEISIEVE 114

  Fly   139 ------EFALGSDG-EYE--------NYDDDDEEEEEDYDEEDEEDGQNGEDVDMPLGMDAAQMA 188
                  |..:.|.| :.|        |.|:.:.|::.||.|.|....::..:||          |
  Fly   115 RLDDLNEGPIQSSGFKVEDILNESKINEDEPNNEDDIDYSEMDYLIYESDTEVD----------A 169

  Fly   189 AQQSVANNANTTEARPKRAFLCQYCDLGFTLPAECQEHELAAHDPNAPYCCNFCNIKLVTRPALI 253
            .|:..:::.|..:.|.:|                      ...|.|..:.|..|...:..|.:.|
  Fly   170 KQELKSDSENPKKRRNRR----------------------NPRDSNRTFFCEECGNHIKDRISFI 212

  Fly   254 SHIKTLHDPDRPYVCAHCRKGFVRRSDLKKHTIVHTGVRPFTCNVCSKSFSRNTNLTKHMRIHSG 318
            .|.|. |...:.:.|..|...|...::||:|...|||.:||.|..||:|||..:...||.|.|:.
  Fly   213 LHCKR-HRGVKEFGCEFCEDRFCTPAELKRHIRKHTGEKPFKCRHCSRSFSDYSTRLKHERTHTN 276

  Fly   319 VKPFVCQQCPRSFQTAVEMMRHTRSHGEVKAFQCGRCPYSFSRRDKLIAHQQVHT-RRDMEQ 379
            .:||||::|..:|.|:..:..|...|...|||:|..|...|||...|..|.:.:. ||:|::
  Fly   277 ERPFVCKECNNAFTTSYILKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTHYRSNAHRRNMQK 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prgNP_609232.2 zf-AD 16..94 CDD:462262 20/82 (24%)
COG5048 <212..340 CDD:227381 37/127 (29%)
C2H2 Zn finger 239..260 CDD:275368 6/20 (30%)
C2H2 Zn finger 268..288 CDD:275368 6/19 (32%)
C2H2 Zn finger 296..316 CDD:275368 9/19 (47%)
C2H2 Zn finger 324..344 CDD:275368 5/19 (26%)
C2H2 Zn finger 352..372 CDD:275368 7/19 (37%)
C2H2 Zn finger 416..436 CDD:275368
C2H2 Zn finger 443..464 CDD:275368
C2H2 Zn finger 470..490 CDD:275368
ranshiNP_649824.1 zf-AD 5..76 CDD:462262 19/74 (26%)
C2H2 Zn finger 198..218 CDD:275368 6/20 (30%)
COG5048 222..>276 CDD:227381 21/53 (40%)
C2H2 Zn finger 226..246 CDD:275368 6/19 (32%)
zf-H2C2_2 238..262 CDD:463886 12/23 (52%)
C2H2 Zn finger 254..274 CDD:275368 9/19 (47%)
C2H2 Zn finger 282..302 CDD:275368 5/19 (26%)
zf-H2C2_2 295..319 CDD:463886 8/23 (35%)
C2H2 Zn finger 310..328 CDD:275368 7/17 (41%)
Blue background indicates that the domain is not in the aligned region.

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