DRSC/TRiP Functional Genomics Resources

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Protein Alignment prg and Zif

DIOPT Version :10

Sequence 1:NP_609232.2 Gene:prg / 34177 FlyBaseID:FBgn0285971 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_649657.1 Gene:Zif / 40795 FlyBaseID:FBgn0037446 Length:388 Species:Drosophila melanogaster


Alignment Length:378 Identity:94/378 - (24%)
Similarity:160/378 - (42%) Gaps:68/378 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 TCRLCHHNTDPNSLNIFDDTVQFCKDVSIAEVSKSLWSVQY----DRNECLSELICSRCLEILEE 76
            |||:|...::  .|...|: ::...:.|..|:...|..|.|    || |.:.:.||..|...|..
  Fly     9 TCRVCLAQSE--RLQRLDE-IREEGEESPNEMLIQLLGVSYSNLNDR-EHIPDGICKSCKVELNM 69

  Fly    77 AFELRKGMQEREQSLQEQLKEMIKDHPKHRPGLNGNPGVFVPEEGCIIVEVDPENLAESSEEEFA 141
            |::.|:....::..::|..:|:         ||       :.|...::::.:..:..:..||.:.
  Fly    70 AYQFREKALRKQMEIEEYCREL---------GL-------LDESDVMMIKEEDGSQQQCDEEMYI 118

  Fly   142 L--GSDGEYENYDDDDEEEEEDYDEEDEED---------------GQNGEDVDMPLGMD------ 183
            |  .:.||.|:.::...||..:.|..|:::               ..|.:..::.|..:      
  Fly   119 LEETTTGEEEHQEEKGHEEYLEVDTSDQQECIGDTIEYLEDNYTIEMNSDQTEIVLESEKQYEET 183

  Fly   184 -----AAQMAAQQSV----------ANNANTTEARPKRAFLCQYCDLGFTLPAECQEHELAAHDP 233
                 |.|.||:.|:          .|:..|::...|..::|..|...:.......||. ..||.
  Fly   184 PSQQLALQEAAKASLKARRGRVRRGLNSLTTSDGTEKGGYICDVCGNFYEKRGRMMEHR-RRHDG 247

  Fly   234 NAPYCCNFCNIKLVTRPALISHIKTLHDPDRPYVCAHCRKGFVRRSDLKKHTIVHTGVRPFTCNV 298
            ...|.|..|:.|...|..|..|:.: |...:||.|:.|.:.|...|.||.|..||.|::|:.|.|
  Fly   248 ICQYACELCDAKFQVREQLRKHMYS-HTGSKPYKCSFCSRQFFYESVLKSHENVHRGIKPYVCKV 311

  Fly   299 CSKSFSRNTNLTKHMRIHSGVKPFVCQQCPRSFQTAVEMMRHTRSHGEVKAFQ 351
            |.|:|:...:||||..|||.:|.:.|..|.:.|:    ::.|.|.|.|.|..|
  Fly   312 CDKAFAYAHSLTKHELIHSDIKLYRCDYCNKDFR----LLHHMRQHEETKLHQ 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prgNP_609232.2 zf-AD 16..94 CDD:462262 20/81 (25%)
COG5048 <212..340 CDD:227381 42/127 (33%)
C2H2 Zn finger 239..260 CDD:275368 6/20 (30%)
C2H2 Zn finger 268..288 CDD:275368 7/19 (37%)
C2H2 Zn finger 296..316 CDD:275368 9/19 (47%)
C2H2 Zn finger 324..344 CDD:275368 5/19 (26%)
C2H2 Zn finger 352..372 CDD:275368 94/378 (25%)
C2H2 Zn finger 416..436 CDD:275368
C2H2 Zn finger 443..464 CDD:275368
C2H2 Zn finger 470..490 CDD:275368
ZifNP_649657.1 zf-AD 9..87 CDD:462262 20/81 (25%)
C2H2 Zn finger 225..245 CDD:275368 4/20 (20%)
COG5048 <250..369 CDD:227381 43/116 (37%)
C2H2 Zn finger 253..273 CDD:275368 6/20 (30%)
C2H2 Zn finger 281..301 CDD:275368 7/19 (37%)
C2H2 Zn finger 309..329 CDD:275368 9/19 (47%)
C2H2 Zn finger 337..353 CDD:275368 5/19 (26%)
Blue background indicates that the domain is not in the aligned region.

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