DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prg and Meics

DIOPT Version :9

Sequence 1:NP_001260253.1 Gene:prg / 34177 FlyBaseID:FBgn0285971 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_524062.1 Gene:Meics / 39539 FlyBaseID:FBgn0025874 Length:583 Species:Drosophila melanogaster


Alignment Length:603 Identity:146/603 - (24%)
Similarity:239/603 - (39%) Gaps:146/603 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 MTQDQDVS---TCRLCHHNTDPNSLNIFDDTVQFCKDVSIAEVSKSLWSV-----QYDRNECLSE 64
            |.:..|.|   .||.|..::     :|..|.  |.|::|...:.:.|.|:     :..|:| :.:
  Fly     9 MERSVDASMGKNCRACAEHS-----SILVDL--FSKEISDPPIWEMLNSILPEICRVKRDE-MPQ 65

  Fly    65 LICSRCLEILEEAFELRKGMQEREQSLQ--EQLKEMIKDHP----KHRPGLNGNPGVFVPEE--G 121
            .||..||...:.||..|   .:.|||.|  .||.::.|.:.    .|......||  .:|.|  |
  Fly    66 KICPTCLVAAQNAFHFR---HKCEQSFQFFSQLLQLDKSNSNLSRSHCRRGTMNP--LIPFEIVG 125

  Fly   122 C------IIVEVD---PE---NLAESSEEEFALGSDGE---------------------YENYDD 153
            |      .:.::|   |:   ::.|.::.:...|.:.|                     .|.::|
  Fly   126 CEDPLDTNVTKLDANRPDVKTDIDEPTDGKATNGQESEPLQEVFEITMNDIKTEDEVSIQETFED 190

  Fly   154 --DDEEEEEDYDEEDEEDGQ----NGEDVDMPL-----------GMDAAQMAAQQSVANNANTTE 201
              |:|.:..:.|.|.|:..|    :.||.|.|.           |.:.:.:..:..|:.:.....
  Fly   191 AFDEENDNNNTDSEREDSDQWTVGSTEDQDEPWIPGGGGRQTVGGNNQSLLCTECGVSYSTQKAL 255

  Fly   202 AR----------PKRAFLCQYCDLGFTLPAECQEH---------------------------ELA 229
            ||          .::..||.:|..||...|:...|                           .:.
  Fly   256 ARHVAKHKEQGDTQKPHLCDFCGRGFRTNAQLTTHRRRHTGERPFKCPLCPKAYTHGPTLKSHMH 320

  Fly   230 AHDPNAPYCCNFCNIKLVTRPALISHIKTLHDPDRPYVCAHCRKGFVRRSDLKKHTIVHTGVRPF 294
            .||....:.|..|:....||..|.:||:. |..:|||.|..|.:.|.:.|.||.|:.:|...|||
  Fly   321 THDEEKGHKCPQCDKTFYTRGNLRAHIQR-HTGERPYKCPDCPQTFAKNSGLKLHSRLHKEERPF 384

  Fly   295 TCNVCSKSFSRNTNLTKHMRIHSGVKPFVCQQCPRSFQTAVEMMRHTRSHGEVKAFQCGRCPYSF 359
            .|.:|.|.|.:|.:|..|:|:|:|.:.|.|..|.:||.....||:|.|:|..:|.|:|..|..:|
  Fly   385 KCELCGKGFVQNQHLITHLRVHNGDRQFKCPDCDKSFFEKSNMMKHQRTHSGIKPFKCEECGQAF 449

  Fly   360 SRRDKLIAHQQVHTRRDMEQQQQMGLIPPMEGDLQQQALQAKQKAAAQT-----KNSRYYHCDVC 419
            |....|.:|.::||.....:..|.|           :...|.|.....|     .|.|.:.|..|
  Fly   450 SHNHHLKSHLRIHTGEKPYKCDQCG-----------KGFSANQSLMKHTLWHVDNNDRPFKCSQC 503

  Fly   420 DRTFQRERDLQRHQALHMD-----SLFACKTCNQGFNRREQLQR----HELEAHGPSFTCGICCI 475
            .:.:..::.|:.|:..|.:     :|..|..|:..|..::.|.:    |::..|    .|..|..
  Fly   504 PKAYDTQQSLRGHEKTHKNPDEPKTLHQCPHCDVRFALKKTLDKHITSHKIRPH----PCPQCPE 564

  Fly   476 SFLHQIELENHLKVHQLQ 493
            .|..|..|:.||::|.|:
  Fly   565 GFFSQKSLKKHLRLHNLK 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prgNP_001260253.1 zf-AD 16..94 CDD:285071 23/84 (27%)
COG5048 <212..340 CDD:227381 46/154 (30%)
C2H2 Zn finger 239..260 CDD:275368 7/20 (35%)
C2H2 Zn finger 268..288 CDD:275368 7/19 (37%)
zf-H2C2_2 280..305 CDD:290200 11/24 (46%)
zf-C2H2 294..316 CDD:278523 9/21 (43%)
C2H2 Zn finger 296..316 CDD:275368 8/19 (42%)
zf-H2C2_2 308..331 CDD:290200 8/22 (36%)
C2H2 Zn finger 324..344 CDD:275368 8/19 (42%)
C2H2 Zn finger 352..372 CDD:275368 6/19 (32%)
C2H2 Zn finger 416..436 CDD:275368 4/19 (21%)
C2H2 Zn finger 443..464 CDD:275368 5/24 (21%)
C2H2 Zn finger 470..490 CDD:275368 7/19 (37%)
MeicsNP_524062.1 zf-AD 21..95 CDD:285071 23/84 (27%)
C2H2 Zn finger 242..262 CDD:275368 3/19 (16%)
C2H2 Zn finger 274..294 CDD:275368 6/19 (32%)
zf-H2C2_2 287..311 CDD:290200 1/23 (4%)
C2H2 Zn finger 302..322 CDD:275368 0/19 (0%)
C2H2 Zn finger 330..350 CDD:275368 7/20 (35%)
zf-H2C2_2 342..366 CDD:290200 9/24 (38%)
C2H2 Zn finger 358..378 CDD:275368 7/19 (37%)
C2H2 Zn finger 386..406 CDD:275368 8/19 (42%)
COG5048 <395..583 CDD:227381 54/203 (27%)
zf-C2H2 412..434 CDD:278523 9/21 (43%)
C2H2 Zn finger 414..434 CDD:275368 8/19 (42%)
zf-H2C2_2 426..451 CDD:290200 10/24 (42%)
C2H2 Zn finger 442..462 CDD:275368 6/19 (32%)
zf-H2C2_2 454..478 CDD:290200 6/34 (18%)
C2H2 Zn finger 470..486 CDD:275368 4/26 (15%)
C2H2 Zn finger 500..520 CDD:275368 4/19 (21%)
C2H2 Zn finger 532..552 CDD:275370 4/19 (21%)
C2H2 Zn finger 559..579 CDD:275370 7/19 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 91 1.000 Inparanoid score I2264
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.960

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