DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prg and CG18011

DIOPT Version :10

Sequence 1:NP_609232.2 Gene:prg / 34177 FlyBaseID:FBgn0285971 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_610559.1 Gene:CG18011 / 36068 FlyBaseID:FBgn0033491 Length:985 Species:Drosophila melanogaster


Alignment Length:99 Identity:23/99 - (23%)
Similarity:34/99 - (34%) Gaps:26/99 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 YYMMAAMGPQYQ----KYLWWKKYIT----------NLQMIQFGMA----FAHSAQLLWTDCGYP 233
            |..:...|||.:    ||..:.||.|          :::.:.:|.|    .||:.   |...|.|
  Fly   430 YERVQGDGPQVKGISVKYPLFMKYFTHYGTQGKSLKDIESMMYGGAGKLFMAHNG---WVMNGDP 491

  Fly   234 RWSVFFTLPNAIFFYM-----LFNDFYKKSYGSK 262
            ........|.....|:     .:.|..|..||.|
  Fly   492 LKDFARAQPGTGNVYLRRELIAWGDSVKLRYGDK 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prgNP_609232.2 zf-AD 16..94 CDD:462262
COG5048 <212..340 CDD:227381 14/60 (23%)
C2H2 Zn finger 239..260 CDD:275368 4/25 (16%)
C2H2 Zn finger 268..288 CDD:275368
C2H2 Zn finger 296..316 CDD:275368
C2H2 Zn finger 324..344 CDD:275368
C2H2 Zn finger 352..372 CDD:275368
C2H2 Zn finger 416..436 CDD:275368
C2H2 Zn finger 443..464 CDD:275368
C2H2 Zn finger 470..490 CDD:275368
CG18011NP_610559.1 C2H2 Zn finger 488..508 CDD:275368 4/19 (21%)
C2H2 Zn finger 518..538 CDD:275368 4/8 (50%)
C2H2 Zn finger 545..565 CDD:275368
C2H2 Zn finger 575..596 CDD:275371
C2H2 Zn finger 754..775 CDD:275368
C2H2 Zn finger 780..801 CDD:275368
C2H2 Zn finger 809..829 CDD:275368
SUF4-like 852..>891 CDD:411020
C2H2 Zn finger 864..885 CDD:411020
C2H2 Zn finger 864..885 CDD:275368
C2H2 Zn finger 891..917 CDD:275368
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.