DRSC/TRiP Functional Genomics Resources

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Protein Alignment prg and sna

DIOPT Version :10

Sequence 1:NP_609232.2 Gene:prg / 34177 FlyBaseID:FBgn0285971 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster


Alignment Length:221 Identity:64/221 - (28%)
Similarity:90/221 - (40%) Gaps:37/221 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 DEEDGQNGEDV----DMPLGM------DAAQMAAQQSVANNANTTEARPKRAFLCQYCDLGFTLP 220
            |.|.|...||:    |:||..      :|...::..||::::.                ..:|..
  Fly   179 DLETGSEPEDLSVRNDIPLPALFHLFDEAKSSSSGASVSSSSG----------------YSYTPA 227

  Fly   221 AECQEHELAA-HDPNAPYCCNFCNIKLVTRPALISHIKTLHDP-------DRPYVCAHCRKGFVR 277
            .......:|| |..|..:.|:.|.....|...|..| :..|.|       .:.:.|..|.|.:..
  Fly   228 MSASSASVAANHAKNYRFKCDECQKMYSTSMGLSKH-RQFHCPAAECNQEKKTHSCEECGKLYTT 291

  Fly   278 RSDLKKHTIVHTGVRPFTCNVCSKSFSRNTNLTKHMRIHSGVKPFVCQQCPRSFQTAVEMMRHTR 342
            ...||.|...||  .|..|.:|.|:|||...|..|:|.|:|.|||.|..|||||.....:..|.:
  Fly   292 IGALKMHIRTHT--LPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRSFADRSNLRAHQQ 354

  Fly   343 SHGEVKAFQCGRCPYSFSRRDKLIAH 368
            :|.:||.:.|..|..||||...|..|
  Fly   355 THVDVKKYACQVCHKSFSRMSLLNKH 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prgNP_609232.2 zf-AD 16..94 CDD:462262
COG5048 <212..340 CDD:227381 41/135 (30%)
C2H2 Zn finger 239..260 CDD:275368 5/20 (25%)
C2H2 Zn finger 268..288 CDD:275368 6/19 (32%)
C2H2 Zn finger 296..316 CDD:275368 9/19 (47%)
C2H2 Zn finger 324..344 CDD:275368 7/19 (37%)
C2H2 Zn finger 352..372 CDD:275368 8/17 (47%)
C2H2 Zn finger 416..436 CDD:275368
C2H2 Zn finger 443..464 CDD:275368
C2H2 Zn finger 470..490 CDD:275368
snaNP_476732.1 SFP1 <245..303 CDD:227516 13/58 (22%)
C2H2 Zn finger 247..267 CDD:275368 5/20 (25%)
C2H2 Zn finger 282..302 CDD:275368 6/19 (32%)
zf-C2H2 306..328 CDD:395048 9/21 (43%)
C2H2 Zn finger 308..328 CDD:275368 9/19 (47%)
zf-H2C2_2 321..344 CDD:463886 13/22 (59%)
zf-C2H2 334..356 CDD:395048 8/21 (38%)
C2H2 Zn finger 336..356 CDD:275368 7/19 (37%)
zf-H2C2_2 348..373 CDD:463886 8/24 (33%)
C2H2 Zn finger 364..380 CDD:275368 7/15 (47%)
Blue background indicates that the domain is not in the aligned region.

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