DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prg and znf280d

DIOPT Version :10

Sequence 1:NP_609232.2 Gene:prg / 34177 FlyBaseID:FBgn0285971 Length:558 Species:Drosophila melanogaster
Sequence 2:XP_002940298.3 Gene:znf280d / 100144635 XenbaseID:XB-GENE-479902 Length:1071 Species:Xenopus tropicalis


Alignment Length:433 Identity:80/433 - (18%)
Similarity:128/433 - (29%) Gaps:162/433 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 QMAAQQSVANNANTTEARPKRAFLCQYCDLGFTLPAECQEHELAAHD-PNAPYCCNFCNIKLVTR 249
            :|.:.:|..|  :||         |.:|...|..|.:.|.|..::|. ..:...|..|.:...:.
 Frog   463 EMQSNESWEN--HTT---------CHHCYRQFPTPFQLQCHIESSHTLYESSTICKICELSFESE 516

  Fly   250 PALISHIKTLHDPDRPYVCAHCRKGFVRRSDLKKHTIVHTGVRPFTCNVCSKSFSRNTNLTKHMR 314
            ..|:.|:|..|.|                           |..|:.|.||....|....:..|.|
 Frog   517 QILLQHMKDNHKP---------------------------GEMPYVCQVCGYRSSAYAEVDSHFR 554

  Fly   315 I-HSGVKPFVCQQCPRSFQTAVEMMRHTRSHGEVKAFQCGRCPYSFSRRDKLIAHQQVHTRRDME 378
            . |...|..:|..|.:..::....|:|...|.....::|..|...|....:.:.|:..|.|...:
 Frog   555 FAHENTKSLLCPFCLKVIKSGTPYMQHYMKHQNKGVYRCANCRLQFLTCKEKMDHKTQHHRTFRK 619

  Fly   379 QQQQMGLIPPMEGDLQ----------------------QQALQA--------------------- 400
            .:|..||.|..:..::                      ..||||                     
 Frog   620 PKQLEGLPPGTKVTIRASVGSIVNSVHSPTNTACTSPPSTALQASSISKITNAKITQGPLVKSNV 684

  Fly   401 ----------KQKAAAQTKNSR----------------YYHCDVCDRTFQRE-RDLQRHQALHMD 438
                      |:|..:.|...|                |:.|..|    |.| :|.:.|...|:.
 Frog   685 QNTKPKIPPPKKKPVSTTSKKRIKMINTALRNLRSVAGYHKCIEC----QLEVKDFEGHFHTHVH 745

  Fly   439 SLFACK---TCNQGFNRREQLQRHELEAHGPS--------------------------FTCGICC 474
            .. .||   :||:.:.      .|.:..||.|                          |...:.|
 Frog   746 CT-KCKFSTSCNKAYT------NHMIRFHGRSSSKQAKASKKAAKGIRRITLVCLNCDFLTDVSC 803

  Fly   475 I---------SFLH--QIELEN-HLKVHQLQHKMAQRAQEAAI 505
            :         |..|  |:.||| .:....|:..||:...|:.:
 Frog   804 LDDMAKHLSESHSHSCQVILENVSIFSSTLEGDMAKSRNESLV 846

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prgNP_609232.2 zf-AD 16..94 CDD:462262
COG5048 <212..340 CDD:227381 26/129 (20%)
C2H2 Zn finger 239..260 CDD:275368 5/20 (25%)
C2H2 Zn finger 268..288 CDD:275368 0/19 (0%)
C2H2 Zn finger 296..316 CDD:275368 6/20 (30%)
C2H2 Zn finger 324..344 CDD:275368 4/19 (21%)
C2H2 Zn finger 352..372 CDD:275368 4/19 (21%)
C2H2 Zn finger 416..436 CDD:275368 6/20 (30%)
C2H2 Zn finger 443..464 CDD:275368 5/23 (22%)
C2H2 Zn finger 470..490 CDD:275368 7/31 (23%)
znf280dXP_002940298.3 DUF4195 32..>94 CDD:463993
PHA03247 <77..294 CDD:223021
C2H2 Zn finger 439..473 CDD:275371 3/11 (27%)
C2H2 Zn finger 476..497 CDD:275368 6/20 (30%)
C2H2 Zn finger 506..527 CDD:275368 5/20 (25%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.