DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13384 and VGAT

DIOPT Version :9

Sequence 1:NP_723383.1 Gene:CG13384 / 34160 FlyBaseID:FBgn0032036 Length:504 Species:Drosophila melanogaster
Sequence 2:NP_610938.1 Gene:VGAT / 36574 FlyBaseID:FBgn0033911 Length:549 Species:Drosophila melanogaster


Alignment Length:596 Identity:125/596 - (20%)
Similarity:210/596 - (35%) Gaps:165/596 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LTPLTNL---------QQIPEGAPRKKKMTERQPLLLQSDASDYEGSRGSAARPVRSSPP----- 54
            |.||.|:         |||||   ||                |||...||.|:....|..     
  Fly    12 LPPLRNILNVAVQTARQQIPE---RK----------------DYEQPPGSTAQQHHHSQQAQHKA 57

  Fly    55 --------DNTLVNVHSEDSLAASGS-------GDDEIGSTDKSYNPTHHRDLE---HPTSNF-- 99
                    |.|.:   |.:....:||       |.|..|.....|..|...:.:   ..|..|  
  Fly    58 MEAGMDGGDTTEM---SSNPFRNAGSWTNDGEGGGDGDGEYRNEYQSTSFNEYDGRYQQTDGFRQ 119

  Fly   100 -----DTLVHLLKGNIGTG--------------------ILAMPDAFKNAGLYVGLFGTMIMGAI 139
                 :....:.:|..|.|                    |:::|.|..:.| |..:...:.:..|
  Fly   120 GSIASEGSSFVCEGEGGGGCKIDEFQAAWNVTNAIQGMFIVSLPFAVLHGG-YWAIVAMVGIAHI 183

  Fly   140 CTHCMHMLVNCSHELCRRFQQPS------LDFSEVAYCSFESGP-LGLRRYSM--LARRIVTTFL 195
            |.:...:||.|.:|     ..|:      :..|.||......|| ||.|..|:  |...::|..|
  Fly   184 CCYTGKVLVQCLYE-----PDPATGQMVRVRDSYVAIAKVCFGPKLGARAVSIAQLIELLMTCIL 243

  Fly   196 FITQIGFCCVYFLFVALNIKDVMDHYY------KMPVQIYLLIMLGPMILLNLVRNLKYLTPVSL 254
            ::...|              |::...|      .....:::.|.|.||   ..:::||.::.:|.
  Fly   244 YVVVCG--------------DLLAGTYPQGSFDSRSWMLFVGIFLLPM---GFLKSLKMVSTLSF 291

  Fly   255 VAALLTVAGLAITFSYMLVDLPDVHTVKPVATWA-----------TLPLYFGTAIYAFEGIGVVL 308
            ...:..:...|:...|.|:.:.|         |.           ..|:..|..::::.. .:.|
  Fly   292 WCTMSHIVINAVILGYCLLQIGD---------WGWSKVRFSIDMENFPISLGVIVFSYTS-QIFL 346

  Fly   309 P-LENNMRTPEDFGGTTGVLNTGMVIVACLYTAVGFFGYLKYGEHVEGSITLNL-PQGDTLSQLV 371
            | ||.||.....|   ..:|:...:..|......|:..:|.:....:..||.|| .||  ...:|
  Fly   347 PTLEGNMIDRSKF---NWMLDWSHIAAAVFKAGFGYICFLTFQNDTQQVITNNLHSQG--FKGMV 406

  Fly   372 RISMAVAIFLSYTLQFYVPVNIVE-PFVR----SHFDTTRAKDLSATV----LRVVLVTFTFLLA 427
            ...:.:...|||.|.:|....::| .|.|    :.|.|....|....|    .||.::..|.|:|
  Fly   407 NFFLVIKALLSYPLPYYAACELLERNFFRGPPKTKFPTIWNLDGELKVWGLGFRVGVIVSTILMA 471

  Fly   428 TCIPNLGSIISLVGAVSSSALALIAPPIIEVITFYNV---GYGRFNWMLWKDVLILIFGLCGFVF 489
            ..||:...::..:|:.:.:.|:.|.|      .::::   |:......:.||.||:..|:...|.
  Fly   472 IFIPHFSILMGFIGSFTGTMLSFIWP------CYFHIKIKGHLLDQKEIAKDYLIIGLGVLFGVI 530

  Fly   490 GTWASLAQILN 500
            |.:.|...::|
  Fly   531 GIYDSGNALIN 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13384NP_723383.1 SdaC 92..484 CDD:223884 92/461 (20%)
SLC5-6-like_sbd 94..495 CDD:294310 95/467 (20%)
VGATNP_610938.1 SLC5-6-like_sbd 144..533 CDD:382020 90/432 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45468285
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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