DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AlaRS and Cdc23

DIOPT Version :9

Sequence 1:NP_523511.2 Gene:AlaRS / 34156 FlyBaseID:FBgn0027094 Length:966 Species:Drosophila melanogaster
Sequence 2:NP_848124.1 Gene:Cdc23 / 52563 MGIID:1098815 Length:597 Species:Mus musculus


Alignment Length:653 Identity:121/653 - (18%)
Similarity:226/653 - (34%) Gaps:218/653 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   340 AKPGFFATLVNTVVDLLGDAFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTT 404
            |.||     |:||.|.  ....|:||            :|..:..|||.|.||:.:         
Mouse    16 AVPG-----VSTVADF--SDLQEIKK------------QLLLIAGLTRERGLLHSS--------- 52

  Fly   405 IPGDVAWRLYDTYGFP-VDLTQL-----MAEEKSLKI----------DMDGYEAAKH-----NS- 447
                 .|.....:..| :.|::|     :.||.:..:          |:..|:.|.|     || 
Mouse    53 -----KWSAELAFSLPALPLSELQPPPPLTEEDAQDVDAYTLAKAYFDVKEYDRAAHFLHGCNSK 112

  Fly   448 -----YVLSQG-KGASKIEEINLDVHAISQLQEQGVPPTNDTFK-------YKYEAVSDERDSAY 499
                 |:.|:. .|..|.::..:|  ::..|::..|  .|:..:       .|::|...:....|
Mouse   113 KAYFLYMYSRYLSGEKKKDDETVD--SLGPLEKGQV--KNEALRELRVELSRKHQARGLDGFGLY 173

  Fly   500 NYGVCNSKI------VALRFENQFVNEITSG---QKAGIVLDK-------------TNFYAESGG 542
            .|||...|:      :.:..|...|..:..|   :...::.||             ..|:.   .
Mouse   174 LYGVVLRKLDLVKEAIDVFVEATHVLPLHWGAWLELCNLITDKEMLKFLSLPDTWMKEFFL---A 235

  Fly   543 QIYDQGALVKVNDEANEFLVDRVYNRGGYIL--------HIGVVEGTLKVGDELEL-------HI 592
            .||.:..|::...:..:.|:|..:::..||:        :|..::..|.:.:||..       ::
Mouse   236 HIYTELQLIEEALQKYQHLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENM 300

  Fly   593 DVERRWL---TMKNHSATHALNHCLLQ--------VLG-----KDTEQKGSLVVPEKLRFDFNSK 641
            |.....|   :||:..:..|.|.|.:.        |:|     :...:|.:|.....|:.:....
Mouse   301 DTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKLNPRYL 365

  Fly   642 AAMTIEQVSKTEQLTKE-MVYKNVPIYAKESKLALAKKIRGLRSVFD-----EVYPDPVRVISFG 700
            .|.|:        :..| |..||.....:..:.|:....|..|:.:.     |:...|...:.:.
Mouse   366 GAWTL--------MGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLYYY 422

  Fly   701 VPVDELEQNPDSEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALK 765
            ....:|..| ||                                     |.:|||          
Mouse   423 RRAHQLRPN-DS-------------------------------------RMLVAL---------- 439

  Fly   766 KSEAFEQ--EIVRLK-------ATIDNDKSG--KDSKSHVKEIVELTEQISHATIPYVKKDEMRN 819
             .|.:|:  ::|..|       |..|.:|..  |.:|.| :::.| :||.:...|.|::.     
Mouse   440 -GECYEKLNQLVEAKKCYWRAYAVGDVEKMALVKLAKLH-EQLTE-SEQAAQCYIKYIQD----- 496

  Fly   820 LLKGLKKTLDDKERALRAAVSVTVVERAKTLCEANPNATVLVEQLEAFNNT----KALDAALKQV 880
             :....:|::.    |..:.:...:.:....|:....|:...::..|||:|    |||...:.|:
Mouse   497 -IYSCGETVEH----LEESTAFRYLAQYYFKCKLWDEASTCAQKCCAFNDTREEGKALLRQILQL 556

  Fly   881 RSQ 883
            |:|
Mouse   557 RNQ 559

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AlaRSNP_523511.2 PLN02900 5..963 CDD:215487 121/653 (19%)
AlaRS_core 6..253 CDD:238360
tRNA_SAD 529..>626 CDD:298782 23/140 (16%)
tRNA_SAD 694..752 CDD:285247 5/57 (9%)
DHHA1 888..957 CDD:280440
Cdc23NP_848124.1 TPR 1 27..63 11/61 (18%)
ANAPC8 28..154 CDD:281973 30/155 (19%)
TPR 2 73..112 7/38 (18%)
TPR 3 114..144 6/31 (19%)
TPR 4 169..200 7/30 (23%)
TPR repeat 172..197 CDD:276809 6/24 (25%)
TPR repeat 202..257 CDD:276809 8/57 (14%)
TPR <212..399 CDD:223533 34/197 (17%)
TPR 5 229..259 6/32 (19%)
TPR 6 263..293 6/29 (21%)
TPR repeat 263..291 CDD:276809 6/27 (22%)
TPR 7 297..327 7/29 (24%)
TPR_1 331..364 CDD:278916 5/32 (16%)
TPR 8 331..361 5/29 (17%)
TPR repeat 331..359 CDD:276809 4/27 (15%)
TPR 9 366..395 7/36 (19%)
TPR_11 367..430 CDD:290150 12/70 (17%)
TPR_1 367..398 CDD:278916 7/38 (18%)
TPR repeat 367..393 CDD:276809 7/33 (21%)
TPR repeat 398..428 CDD:276809 3/29 (10%)
TPR 10 400..432 5/32 (16%)
TPR 11 433..466 11/80 (14%)
TPR repeat 433..461 CDD:276809 9/75 (12%)
TPR repeat 467..495 CDD:276809 9/29 (31%)
TPR 12 468..500 8/39 (21%)
TPR repeat 501..536 CDD:276809 4/38 (11%)
TPR 13 504..540 4/39 (10%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0013
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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