DRSC/TRiP Functional Genomics Resources

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Protein Alignment AlaRS and mat-3

DIOPT Version :10

Sequence 1:NP_523511.2 Gene:AlaRS / 34156 FlyBaseID:FBgn0027094 Length:966 Species:Drosophila melanogaster
Sequence 2:NP_497203.1 Gene:mat-3 / 175205 WormBaseID:WBGene00003134 Length:673 Species:Caenorhabditis elegans


Alignment Length:189 Identity:40/189 - (21%)
Similarity:76/189 - (40%) Gaps:40/189 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   202 LVNMDDPD-------VLEIW------NLVFIQYNRESDGSLKQLPKKHIDCGM-GFERLVSVI-- 250
            :.:::|.|       |..:|      .||..::::.|  ...|..::.:..|| |...:::.|  
 Worm   278 IADIEDADKFVTSAEVKSLWMGDWFMTLVLQRFHQHS--MAIQKAEQLVTRGMTGLPMIITKIAA 340

  Fly   251 -QNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLADHARTITIALA----- 309
             .|.|  :|.|..:..|:.::.   |.||  |:|  |:..:..:..:..|..:..|:|:.     
 Worm   341 CSNAR--HDHDQAISNFEDVRK---ADPY--RLG--DLHLLSDSLYIRNDQKKLSTLAIEVYKVH 396

  Fly   310 --DGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAFPEVKKD 366
              ...|.......:.:||....|:::....|...||..|..|     |:|..|.|:|.:
 Worm   397 KFRWETCCIVANYHAIRRDSEHAIKFFQRALRLNPGLAALWV-----LIGHEFMEMKNN 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AlaRSNP_523511.2 PLN02900 5..963 CDD:215487 40/189 (21%)
mat-3NP_497203.1 PEP_TPR_lipo <248..558 CDD:274350 40/189 (21%)
TPR repeat 401..428 CDD:276809 4/26 (15%)
TPR 407..>560 CDD:440225 13/49 (27%)
TPR repeat 434..462 CDD:276809 7/22 (32%)
TPR repeat 467..497 CDD:276809
TPR repeat 502..529 CDD:276809
TPR repeat 577..605 CDD:276809
Blue background indicates that the domain is not in the aligned region.

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