DRSC/TRiP Functional Genomics Resources

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Protein Alignment strat and Rabif

DIOPT Version :10

Sequence 1:NP_609209.2 Gene:strat / 34142 FlyBaseID:FBgn0032020 Length:122 Species:Drosophila melanogaster
Sequence 2:NP_663485.1 Gene:Rabif / 98710 MGIID:2138605 Length:123 Species:Mus musculus


Alignment Length:505 Identity:102/505 - (20%)
Similarity:181/505 - (35%) Gaps:148/505 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 EESSKVLETLKKIGGIDVRHLWIIHDETFREFFDWFTKIDDDN--LVTDMLLKNYQEL---DRNG 61
            ||.|.:.:||..|     .||..:.          ||. |.::  ||.:.:|||..||   :...
Mouse   263 EEISSIYKTLSTI-----LHLGNLQ----------FTS-DGEHVVLVGEDMLKNISELTSTEPEN 311

  Fly    62 TVLNDALLEEQLHALNHEFSGILE--HTD------RDVEALEL----------QLEQLVEVEEKY 108
            |  ..|||...:.....|   ::|  |::      ||..|..|          ::..::||:: |
Mouse   312 T--RKALLYRTVATGGGE---VIEKGHSEQEASYGRDAFAKALYERLFAWIVGRINGVIEVKD-Y 370

  Fly   109 EKLLNGAKKTDLALTK----ELSELERSVRDQ---EYVLEKVATNSVEMARQLEESQQATQQQIS 166
            ...|:| |.|.:.:..    |:  .:.:..:|   .|..||:....:|:.  |.:.|:..|::..
Mouse   371 NPALHG-KNTVIGVLDIYGFEI--FDNNSFEQFCINYCNEKLQQLFIELI--LRQEQEEYQREGI 430

  Fly   167 DLQHCYYQRQNPPLFIYQMP----IDQFDAKC------------DQFLKYLELYVKKHFTVKRLD 215
            ..||..|......:.:.:.|    |...|..|            |...|.|..:  .|:|.::|.
Mouse   431 TWQHIEYFNNQIIVDLVEQPHKGIISVLDEACLIAGKVTDTVCLDSMNKKLGQH--PHYTSRKLC 493

  Fly   216 NSKSTDD-----------GDNQQVIDELEGIKMRLDEEELKLLEAKREYAGVMKLVERLQGHSWM 269
            .:..|.:           ||....:|..      ||:.:..|.:.          .:||..:|..
Mouse   494 PADKTMEFNRDFRIRHYAGDVTYSVDGF------LDKNKDPLFQD----------FKRLMYNSSD 542

  Fly   270 PLKVSALKKQCVELRAANEQDLLRMDLLKHELDTLIRQV-------------NELKIESVLYENN 321
            |:.........:.:....::.|....|.|:.:..|:.::             ||:| ..:|:::.
Mouse   543 PVLKEMWPDGKMSITEVTKRPLTAATLFKNSIIALVDKLACKEPYYVRCIKPNEVK-SPLLFDDG 606

  Fly   322 R-------------VKLNRAVSRLEYIQRLDASISRELMNAELLWV--LMQLDLEKI-----RDR 366
            |             |::.||  ...|.|.....:.|..|..|..|.  ||..|.|.:     :..
Mouse   607 RCQHQVAYLGLLENVRVRRA--GFAYRQPYARFLQRYKMTCEYTWPNHLMSTDQEAVEAIVNQHG 669

  Fly   367 FDNADEMNGESKRCFRRIDTMRQIERNGA---------LEEAYGDYLAQL 407
            |:: |...|.:|...|...|:..:|:..|         |::.:...||::
Mouse   670 FED-DVAYGLNKIFVRTPRTLFTLEQERAALIPILVLFLQKVWRGALARM 718

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stratNP_609209.2 Mss4 26..119 CDD:461301 27/115 (23%)
RabifNP_663485.1 Mss4 27..122 CDD:461301
Blue background indicates that the domain is not in the aligned region.

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