DRSC/TRiP Functional Genomics Resources

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Protein Alignment strat and DSS4

DIOPT Version :10

Sequence 1:NP_609209.2 Gene:strat / 34142 FlyBaseID:FBgn0032020 Length:122 Species:Drosophila melanogaster
Sequence 2:NP_015342.1 Gene:DSS4 / 856128 SGDID:S000006221 Length:143 Species:Saccharomyces cerevisiae


Alignment Length:119 Identity:28/119 - (23%)
Similarity:49/119 - (41%) Gaps:42/119 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 SNVRCQF--CNCLMLKAQEGTYNQEE-VDVPLMTQK-----QDRT-ADSLNSEPLKDFWLVKDMM 73
            |...|.|  |:..::     |.|.:. :::|.....     ::|| .|:..||  .:|.:|.|:.
Yeast     2 SKATCSFEGCHSAVI-----TINDDNIINLPEQVHSEFKLLENRTMRDATPSE--SNFLVVPDVW 59

  Fly    74 TFENIGFSNTVDGR--------------------------KFLVCADCERGPVG 101
            .|:|:|.|..:...                          |:|:||||::||:|
Yeast    60 DFDNVGVSREIPSSILGDLSDKSDFVFEYGNSSWKIKKCLKYLICADCDKGPIG 113

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stratNP_609209.2 Mss4 26..119 CDD:461301 24/109 (22%)
DSS4NP_015342.1 RabGEF 2..136 CDD:238150 28/119 (24%)

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