DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scgalpha and sgce

DIOPT Version :10

Sequence 1:NP_001260246.1 Gene:Scgalpha / 34135 FlyBaseID:FBgn0032013 Length:453 Species:Drosophila melanogaster
Sequence 2:XP_031759955.1 Gene:sgce / 100496492 XenbaseID:XB-GENE-494836 Length:474 Species:Xenopus tropicalis


Alignment Length:323 Identity:81/323 - (25%)
Similarity:143/323 - (44%) Gaps:63/323 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 GELFTYKIEPQLFNWTH-------QVISQQFRYRPSLKNYPDLPSWMRYMYSHEYHAGFLYGTPP 85
            |.||.:.:|.:.:....       ::.:....:..:|..|||.|.|:||:....|..|.|||:|.
 Frog    69 GVLFVHVLEREYYKGEFPPYPKPGELSNDPITFNTNLMGYPDRPGWLRYIQRTPYSDGVLYGSPT 133

  Fly    86 ASSAGKDLSLDVVALNRQNYETRR--VVVTMFVAHKFPTPNVVQMKINNLNWVHLMDPGRRENLR 148
            ..|.||...:::.|.||:.:||.|  :::.:..|..||.|...:..|.|:|...::......:..
 Frog   134 IESVGKPTVIEITAYNRRTFETARHNLIINIMSAEDFPLPYQAEFFIKNMNVEEMLASEVLGDFL 198

  Fly   149 NIFRNDLWPNSKEDLSVVFMESAVNMGGRLPLRP--QQREGVIVHVGSFAQFSPRLQELQ----- 206
            ...:| :|  ..|.|:.:.:.||::.|||:|| |  ..:|||.|.||:.:.||..|:|::     
 Frog   199 GAVKN-VW--QPERLNAINITSALDRGGRVPL-PINNMKEGVYVMVGADSPFSSCLREVENPQNQ 259

  Fly   207 ----EEVRPLYKLPSCTYKRTSVQKIFENVGFKLDWCAFRMVGMESPTEILFHSGK--------- 258
                :|:.|..   ||. |:...|       |.:|||...:|   ..|::::.:.:         
 Frog   260 LRCSQEMEPAI---SCD-KKFRAQ-------FHIDWCKISLV---DKTKVVYITQEVVRGDGILP 310

  Fly   259 -QNEQQMPDDLNQRQEDRWMGIAREDVPERNYIDEFAFAFAIPGMIFAILIGMLSAVLCFQHE 320
             ..|...|.|:               :..|||..:|....|:|..:..:|..:|:.::|.:.|
 Frog   311 DVGEYSPPSDM---------------LKSRNYYSDFLLTLAVPSAVALVLFAILAYIMCCRRE 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScgalphaNP_001260246.1 Sarcoglycan_2 2..410 CDD:461668 81/323 (25%)
sgceXP_031759955.1 Sarcoglycan_2 51..432 CDD:461668 81/323 (25%)

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