DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8086 and nup98

DIOPT Version :9

Sequence 1:NP_001260237.1 Gene:CG8086 / 34131 FlyBaseID:FBgn0032010 Length:1603 Species:Drosophila melanogaster
Sequence 2:NP_956979.2 Gene:nup98 / 777756 ZFINID:ZDB-GENE-040426-1180 Length:1814 Species:Danio rerio


Alignment Length:973 Identity:194/973 - (19%)
Similarity:301/973 - (30%) Gaps:311/973 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 TNPGPATVQLPTLIGSKVP--DSKKKAAPSYSFGHKL---------------------------- 84
            ||.|...|....|.|:|..  .:...:|||:..|..|                            
Zfish   359 TNTGFGNVGTQNLFGNKPAGFGTTTTSAPSFGSGPGLFANKPTLTLGTNTNTSTFGFSGTGAGGG 423

  Fly    85 --GGKYDTSGPGP------------AQYNVTGMRAK-------------GRDYPRAATLQ-SRPK 121
              |.|...:|.||            .|.::.|...|             |.....|:||. ..|:
Zfish   424 LFGNKTAATGLGPVLGAGFGAGVGTGQTSLFGNNQKLGSTLGSVGTFGAGGFNTGASTLNFGAPQ 488

  Fly   122 ELTRFSNPGPGEYDVVPAAKAV----IDATPKYTFGQRPVALKTFQIPGPNYYQVVPLDVVKRRA 182
            :....::|..|     .|.:||    |.|.....||..|:.......|.....::.|.:...::|
Zfish   489 QPIALTDPSAG-----AAQQAVLQQQISALAYSPFGDSPLFRNPLSDPKKKEERLKPTNPAAQKA 548

  Fly   183 PRYSFRIKVNVYLVNNPAPNSYCPEKVTQSKKNAPRYTFGRRTKIEHDQGTPAPGAYCPEK-VK- 245
            .....:.|:      .|.|.:....|...|..::....|   ..::.|:.:...||:.|.| :| 
Zfish   549 LTTPTQYKL------TPRPATRVRPKALSSSGSSKSQLF---DGLDDDELSLNNGAFMPRKSIKK 604

  Fly   246 -----LNKTPEFSFGIKHHEQRPDYTPAPGTY------------KPEQVVLE-------HIPAYS 286
                 ||.:..::..:   .:..|...:|..|            :|.:..:|       .:..:.
Zfish   605 LVLKNLNNSSLYNNSL---NREADDLASPSEYPQNGLSLSLDEGEPREANMERRGEDDLEVSKFY 666

  Fly   287 FGLKTK---HIQVS----DTPAP----GAYSPEKSRLHSAPAYSIAGKASQ----DVVDCTPAPG 336
            ....||   |.|:|    ||.:.    |:.|.......|:...|:|..:.|    :.::....| 
Zfish   667 TNPITKPIPHAQLSPLLQDTISEFNMRGSGSHRNGLEASSEDLSLAEDSIQEERDEELEAQKPP- 730

  Fly   337 AYEPEKCVLSRTPAFSFGHRAELAKSSDTPA-------------------PGTYNPEKVRLDHTP 382
              .|...||||...::.....||.|..:...                   ||..|...:.||...
Zfish   731 --HPAGIVLSRVGYYTIPSMEELGKMLNENGECIVENFTIGRKGYGSVFFPGEVNLTNMILDEIV 793

  Fly   383 AF---TLSGRPETRSVSETPAPGSYAPEK--------YRNDRT-------PAFTFGGKHEQRLES 429
            .|   .:...|:.:   :.|..|.....:        :.||:|       |.......:|.|||:
Zfish   794 HFRRKEIIVYPDDK---DKPPVGEGLNRRAEVTLDGVWPNDKTTCCQIKSPDRLTEMNYEGRLEA 855

  Fly   430 STPAPG----DYCPE------KVRH---------DHNPAFSFAGRHDLHKPSDTPAPGAYDTEKV 475
            ::...|    :|.||      :|.|         |.....|.| :.||.|......||.......
Zfish   856 ASRKQGARFLEYRPETGSWVFEVAHFSKYGLQESDEEEEISPA-KLDLKKLKTAVPPGLAQLPLT 919

  Fly   476 RQDHNP-AFSFAGRHDLHKPSETPAPGAYSPEKVRQDHNPAFSMA----GKHS----QKVTSDSP 531
            :|...| |.|.|....|.:.||..:..|    .:.|:| |..|:.    |:.:    .|:.|::|
Zfish   920 QQQGAPQAQSTAVLELLSRVSELDSDMA----DITQEH-PVESILDDEDGERTSFEENKLRSETP 979

  Fly   532 APGDYCPEKVRLDHTPAYSFGVKSDPKV-----------ENNTPAPGDYHPEKVRQD---HNPAY 582
            |..    |.|......|.|.|:  :|..           ::......::...|:.||   .....
Zfish   980 AEN----EPVSASSQIASSMGI--NPHTLQIMKASLFADDDECDMFQEHVSSKLIQDVASTKLLL 1038

  Fly   583 SFAGRHDLQKPDNTPAPGAYFPEKVRLDHNPAFSMAGKYDAKVTNDTPAPGDYSPEKVRQDTNPA 647
            |.|||         |:.||....|        |:..|...:::. :.|..|      :.|..|.:
Zfish  1039 SGAGR---------PSIGALLQNK--------FTSGGGLFSQLP-EVPFSG------ISQKLNKS 1079

  Fly   648 YSFAGRHDLHKPSETPAPGAYSPEKVRLDHNPAFTMAGKHDQKILN-------GTPAPGDYSPE- 704
            .:          ||...|..          .|:|.:.....:..|.       |.|.|.:.|.. 
Zfish  1080 LA----------SEAAWPSL----------GPSFLLPPPPPEPTLRTVGARRLGGPVPLEASITL 1124

  Fly   705 -KCRLDHTPAYSFG-------GKNDPKVENNTPAPGDY----HPEKVRLDHNPAYSFAGRHDLQK 757
             |.||....|...|       |.|...|.:     ||.    ||.|.....|..:.|     |.|
Zfish  1125 GKGRLLMDAALFRGRSFRVGWGPNWTLVHS-----GDQLSVTHPVKEPAAENLGFGF-----LPK 1179

  Fly   758 PSDTPAPGAYSPEKVRQDHNPAFSMAGKPVEKLTNGTPAPGDYS------PEKVRLNHTPAYT 814
            |:.| .|...||.|||             ||::....|.....|      |.::.|.|:...|
Zfish  1180 PTKT-KPITESPFKVR-------------VEQVVGLEPKQSSESLSLYLRPLEIGLKHSTINT 1228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8086NP_001260237.1 None
nup98NP_956979.2 Nucleoporin_FG 39..133 CDD:290362
Nucleoporin_FG 217..357 CDD:290362
Nucleoporin_FG 324..>400 CDD:290362 12/40 (30%)
Nucleoporin2 741..881 CDD:282016 25/142 (18%)
Nup96 1333..1626 CDD:288926
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R852
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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