DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8086 and Nupl1

DIOPT Version :9

Sequence 1:NP_001260237.1 Gene:CG8086 / 34131 FlyBaseID:FBgn0032010 Length:1603 Species:Drosophila melanogaster
Sequence 2:NP_733479.1 Gene:Nupl1 / 71844 MGIID:1919094 Length:587 Species:Mus musculus


Alignment Length:284 Identity:65/284 - (22%)
Similarity:96/284 - (33%) Gaps:79/284 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly  1337 STPAFTFGMRLGRERISDTPAPSAYEPEKHS---LHSTPAYSF---GTKSDIRVTTDAPAPGHYH 1395
            |||  :.|:..|....|.|||.::.......   ..|.||..|   ||.:....||.|...|.  
Mouse    36 STP--SVGLNFGSLGSSVTPASTSASAGGFGTGLFGSKPATGFTLGGTSAGTAATTSASTTGF-- 96

  Fly  1396 PEQCKLD-SSPAYS---FGLKTVPTASLPEPRGAYIEDRIVQRRERRLASPVRNNAECTTT---T 1453
                .|. |.||.|   |.|....|:                      ||.:..::..|:|   :
Mouse    97 ----SLGFSKPAASATPFALPVTSTS----------------------ASGLTLSSALTSTPAAS 135

  Fly  1454 TNHTNNNAGSSTTTTTTTTTTTKTFINGVEQPELQKKETTKQVNGTHKELKSAPQAPLSNGNIVS 1518
            |..|.||.|:  |..||||.:|...:.|.                    |.....:...:||..:
Mouse   136 TGFTLNNLGA--TPATTTTASTGLSLGGA--------------------LAGLGGSLFQSGNTAT 178

  Fly  1519 NG---NHSKMVSTTTRIQEVAHGQKESG-NLKVVASGKSDASATK---AAAVSHQTVVQADGAIV 1576
            :|   |...:...||.....|..:...| :....:..|||.:.|:   :.|:..:.:..     |
Mouse   179 SGLGQNALSLSLGTTAPTSAASNEGLGGIDFSTSSDKKSDKTGTRPEDSKALKDENLPP-----V 238

  Fly  1577 TSGQSSRMQTVKYAVEASSVQEKI 1600
            .......:|  |:..|...|||:|
Mouse   239 ICQDVENLQ--KFVKEQKQVQEEI 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8086NP_001260237.1 None
Nupl1NP_733479.1 14 X 2 AA repeats of F-G 7..567 65/284 (23%)
Nucleoporin_FG2 22..587 CDD:292589 65/284 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 196..236 7/39 (18%)
OEP 278..424 CDD:280481
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 565..587
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R852
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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