DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8086 and nup62l

DIOPT Version :9

Sequence 1:NP_001260237.1 Gene:CG8086 / 34131 FlyBaseID:FBgn0032010 Length:1603 Species:Drosophila melanogaster
Sequence 2:NP_001107068.1 Gene:nup62l / 563392 ZFINID:ZDB-GENE-030131-8491 Length:507 Species:Danio rerio


Alignment Length:532 Identity:106/532 - (19%)
Similarity:158/532 - (29%) Gaps:167/532 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1107 TPAFTFGGKNDPKVE------------NNTPAPGDYHPEKVRQDHVPAFSFAGRHDLHKPNETPA 1159
            |..|.||   .||..            ::|||.|             .||| |.:.....|....
Zfish    10 TGGFNFG---TPKTTAAATTGFGVPQGSSTPAGG-------------GFSF-GANQPQTQNFGNP 57

  Fly  1160 PGAYSPEKVRQDHNPAFTMAGKHDPKVTHDTPAPGDYHPEKVRLDHNPAFSFAGRHDLHKPSETP 1224
            |...:....:...|...|..|......|..|.|.|             .|||.|  .|.|.|...
Zfish    58 PSQIAGLLAQPTQNNGSTQGGFSFGAQTQSTTAGG-------------GFSFGG--SLPKLSTPA 107

  Fly  1225 APGDYFPEKVRQDFNPA--------------FTFAGKHDPRSLSESPAPGDYSPEKVRLDHAPAF 1275
            ||            .||              |:..|.....:.::.|..|              |
Zfish   108 AP------------QPATTGVSLGASTTGTGFSLGGLTPQTTAAQQPMGG--------------F 146

  Fly  1276 SFGGKHDPKTEHLHPAPCDYAPEKVRLDHTPAYTIAGRPAADHVSQTPAPCDYHPEQCQVDSTPA 1340
            |||.   ||.:....||.         ..||..::..:|       |.......|....:.||.|
Zfish   147 SFGA---PKVQAASVAPA---------QPTPVLSLGVQP-------TTGLSLGAPTAASIASTTA 192

  Fly  1341 FTFGMRLGRERISDTPAPSAYEPEKHS------------LHSTPAYSFGTKSDIRVTTDAPAPGH 1393
            ..||:     :.|.||||::......|            :.|||...|...|...........| 
Zfish   193 INFGI-----KTSATPAPASTALSSQSSTAPVSSLFANPIASTPVTGFTLGSSTASVAPVMTSG- 251

  Fly  1394 YHPEQCKLDSSPAYSFGLKTVPTASLPEPRGAYIEDRIVQRRERRLASPVRNNAECTTTTTNHTN 1458
                    .|:|| |..||  |..::|                     .:...|..|..||..:.
Zfish   252 --------SSAPA-SLSLK--PLGAVP---------------------AITTAAASTGATTGFSL 284

  Fly  1459 NNAGSSTTTTTTTTTTTKTFINGVEQPELQKKETTKQVNGTHKE--------LKSAPQAPLSNGN 1515
            ....:::|...:||.|:.|.:.....|.:...:....:|....|        |:.|.|....:..
Zfish   285 GLKTAASTALASTTATSTTVVTASTAPVMSYAQLEALINKWSSELEDQERHFLQQATQVNAWDRM 349

  Fly  1516 IVSNGNHSKMVSTTTRIQEVAHGQKE-SGNLKVVASGKSDASATKAAAVSHQTVVQADGAI-VTS 1578
            :|.||  .|:.:....:::|...|:. ...|..:.|.:.:..  ...:...::|.:..|.| :.:
Zfish   350 LVENG--EKITALHKDMEKVKLDQRRLDQELDFILSQQKELE--DLLSPLEESVKEQSGTIYMQN 410

  Fly  1579 GQSSRMQTVKYA 1590
            ....|.:|.|.|
Zfish   411 ADEERERTYKLA 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8086NP_001260237.1 None
nup62lNP_001107068.1 Nsp1_C 313..414 CDD:282867 16/104 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R852
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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