DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8086 and nup45

DIOPT Version :9

Sequence 1:NP_001260237.1 Gene:CG8086 / 34131 FlyBaseID:FBgn0032010 Length:1603 Species:Drosophila melanogaster
Sequence 2:NP_593058.1 Gene:nup45 / 2541890 PomBaseID:SPAC22G7.09c Length:425 Species:Schizosaccharomyces pombe


Alignment Length:325 Identity:70/325 - (21%)
Similarity:111/325 - (34%) Gaps:121/325 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   246 LNKTPEF-SFGIKHHEQRPDYTPAPGTYKPEQVVLEHIPAYSFGLKTKHIQVSDTPAP------- 302
            |||||.| |.|.::  |....:...|.:.          :.:||..|:    ::|||.       
pombe     4 LNKTPSFGSTGTQN--QNTGTSAGTGLFS----------SNTFGNNTQ----ANTPASTGFGGVT 52

  Fly   303 -GAYSPEK------------SRLHSAPAYSIAGKASQDVVDCTPAPGAYEPEKCVLSRTPAFSFG 354
             ||:...|            :...:.|..::.|:..|      .|||             ...||
pombe    53 GGAFGQTKPQTGGSLFGNKPNATSTTPGLNLFGQNPQ------AAPG-------------GSLFG 98

  Fly   355 HRAELAKSSDTPAP-GTYNPEKVRLDHTPA------FTLSGRPETRSVSETPAPGSYAPEKYRND 412
                 |.::...|| |.:|..:.:.....|      |.|||:.:|:|.:: ||..:         
pombe    99 -----ASTTKPQAPGGLFNQNQTQAQPAQAAPTGGLFGLSGQNQTQSQTQ-PAQAN--------- 148

  Fly   413 RTPAF------TFGGKHEQRLESSTPAPGDYCPEKVRHDHNPAFS-FAGRHDLHKPSDTPAPGAY 470
             |..|      |.||..:|. ..:|...|.:..:       ||.: ..|:..  :||.:...|..
pombe   149 -TSLFGQSNIGTTGGLFDQN-RPNTSTFGQFSTQ-------PASAGLFGQST--QPSGSTGFGLS 202

  Fly   471 DTEKVRQDHNPAFSFAGRHDLHKPSETPAPGAYSPEKVRQDHNPA------FSMAGKHSQKVTSD 529
            :..:.    .|.||.|.:    :||.|..|.           |||      :|....::||...|
pombe   203 NNTQT----TPFFSAAQQ----QPSTTQLPS-----------NPAINATTRYSSLNANTQKFLDD 248

  Fly   530  529
            pombe   249  248

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8086NP_001260237.1 None
nup45NP_593058.1 Nucleoporin_FG2 12..>414 CDD:292589 64/317 (20%)
Nucleoporin_FG 43..142 CDD:290362 25/122 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R852
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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