DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pvr and Fgfr3

DIOPT Version :9

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:XP_006251452.1 Gene:Fgfr3 / 84489 RGDID:620714 Length:804 Species:Rattus norvegicus


Alignment Length:978 Identity:261/978 - (26%)
Similarity:379/978 - (38%) Gaps:321/978 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   444 EPSGHYNVQEYANRTIQMTANFE-GFPTPSFSWFKPDGTEVRQSENNFKILSTELSTMLQVLNAQ 507
            |||....|...:..|::::.:.. |.||....|.| ||..:..|.   :||..  ...||||||.
  Rat    40 EPSQQEQVAFGSGDTVELSCHPPGGAPTGPTLWAK-DGVGLVASH---RILVG--PQRLQVLNAT 98

  Fly   508 LQDSGTYVLRGSNSFGVVQR-------EYNVSVMDAPAL----KMSDAYVQVGS-----VARLEC 556
            .:|:|.|..:        ||       .::|.|.|||:.    ...|.....|:     ..|::.
  Rat    99 HEDAGVYSCQ--------QRLTRRVLCHFSVRVTDAPSSGDDEDGEDVAEDTGAPYWTRPERMDK 155

  Fly   557 TVRSYPPAIVTFFFRPCSLEPQWPTCSVLNQNFSLPSEQEKYQFQTRPRPGKLSVERIYEVSFLP 621
            .:.:.|.|....|..|.:..|. |:.|.|........|......:.|.:...|.:|     |.:|
  Rat   156 KLLAVPAANTVRFRCPAAGNPT-PSISWLKNGKEFRGEHRIGGIKLRHQQWSLVME-----SVVP 214

  Fly   622 TEPGILTCIAQNIIDGKERRTLT------KAH--VLLGNISENMT-IYGFDKDHKIAKEDNVNFT 677
            ::.|..||:.:|.. |..|:|.|      ..|  :|...:..|.| :.|.|          |.|.
  Rat   215 SDRGNYTCVVENKF-GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSD----------VEFH 268

  Fly   678 CEALAYHFDGNLKWFINGEDLKESDSVHIETSHTKYSYKSTVHIT-------------------T 723
            |:..: ....:::|      ||     |:|.:.:|.....|.::|                   .
  Rat   269 CKVYS-DAQPHIQW------LK-----HVEVNGSKVGPDGTPYVTVLKSWISENVEADARLRLAN 321

  Fly   724 ISDRDRGTYECRAYHNDKDAVYSSREIDLYVHDPSAPQWTNGGQEGHSKIKRKLSQTLELECAST 788
            :|:||.|.|.|||   ......:.:...|.||.|.|                             
  Rat   322 VSERDGGEYLCRA---TNFIGVAEKAFWLRVHGPQA----------------------------- 354

  Fly   789 AVPVAIVRWFKDDKEVTESKLRHIIEKESKLLITHLYPGDEGVYKCVVENRLDRIERSFTVVISD 853
                            .|.:|..:.|..|      :|.|                      |:| 
  Rat   355 ----------------AEEELMEVDEAGS------VYAG----------------------VLS- 374

  Fly   854 LPGISMAWVWFGVILFLILIGLCVFLAVRYQKEHKRHLA-----------LKAAGLANFEEGAVG 907
                      :||..||.::.:......|.:...|:.|.           ||.....:.|..:..
  Rat   375 ----------YGVGFFLFILVVAAVTLCRLRSPPKKGLGSPTVHKVSRFPLKRQVTVSLESNSSM 429

  Fly   908 HINPDL------------TLDEQAEL-LPYNREFEFPRENLKLGKQLGAGAFGVVLKGEAKGIRR 959
            :.|..|            .|...:|| ||.:.::|..|..|.|||.||.|.||.|:..||.||.:
  Rat   430 NSNTPLVRIARLSSGEGPVLANVSELELPADPKWELSRTRLTLGKPLGEGCFGQVVMAEAIGIDK 494

  Fly   960 EEPT--TTVAVKMVKATADNEVVRALVSELKIMVHLGQHLNVVNLLGAVTKNIAKRELMVIVEYC 1022
            :...  .||||||:|..|.::.:..||||:::|..:|:|.|::|||||.|:.   ..|.|:|||.
  Rat   495 DRTAKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQG---GPLYVLVEYA 556

  Fly  1023 RFGNIQNFLLRNRKCFINQINPDTDHIDPSIMTQRMSDNYELHRDTNGGGLKYANVGFPIHSYIN 1087
            ..||::.||...|                                                    
  Rat   557 AKGNLREFLRARR---------------------------------------------------- 569

  Fly  1088 EPHNNNTQPPTHRRNSDNDPRSGTRAGRTGSGTATYSYDRQMDTCATVMTTVPEDDQIMSNNSVQ 1152
                    ||                          ..|...|.|     .:||:.         
  Rat   570 --------PP--------------------------GMDYSFDAC-----RLPEEQ--------- 586

  Fly  1153 PAWRSNYKTDSTEAMTVTTVDLISWAFQVARGMDYLSSKKVLHGDLAARNILLCEDNVVKICDFG 1217
                            :|..||:|.|:||||||:||:|:|.:|.||||||:|:.||||:||.|||
  Rat   587 ----------------LTCKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFG 635

  Fly  1218 LARSMYRGDNYKKSENGKLPIKWLALESLSDHVFSTYSDVWSYGIVLWEMFSLAKVPYPGIDPNQ 1282
            |||.::..|.|||:.||:||:||:|.|:|.|.|::..|||||:|::|||:|:|...||||| |.:
  Rat   636 LARDVHNLDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGI-PVE 699

  Fly  1283 ELFNKLNDGYRMEKPKFANQELYEIMLECWRKNPESRPLFAELEKRFANMLGEDVASHYLDLNNP 1347
            |||..|.:|:||:||.....:||.||.|||...|..||.|.:|.:....:|.......||||:.|
  Rat   700 ELFKLLKEGHRMDKPANCTHDLYMIMRECWHAVPSQRPTFKQLVEDLDRILTVTSTDEYLDLSVP 764

  Fly  1348 YMQ 1350
            :.|
  Rat   765 FEQ 767

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG 346..432 CDD:214652
Ig <363..432 CDD:299845
Ig 466..533 CDD:299845 22/74 (30%)
IG_like 672..754 CDD:214653 20/100 (20%)
Ig 674..739 CDD:143165 19/83 (23%)
IGc2 779..840 CDD:197706 6/60 (10%)
PKc_like 927..1332 CDD:304357 143/406 (35%)
Pkinase_Tyr 935..1329 CDD:285015 141/395 (36%)
Fgfr3XP_006251452.1 IGc2 51..108 CDD:197706 20/62 (32%)
IG 52..123 CDD:214652 23/84 (27%)
Ig2_FGFR 155..239 CDD:143265 22/90 (24%)
IG_like 254..349 CDD:214653 24/119 (20%)
Ig3_FGFR 262..350 CDD:143175 22/112 (20%)
PTKc_FGFR3 457..790 CDD:173652 152/431 (35%)
Pkinase_Tyr 470..746 CDD:285015 141/395 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0200
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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