DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pvr and Fgfr3

DIOPT Version :10

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:XP_006251454.1 Gene:Fgfr3 / 84489 RGDID:620714 Length:803 Species:Rattus norvegicus


Alignment Length:978 Identity:261/978 - (26%)
Similarity:380/978 - (38%) Gaps:322/978 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   444 EPSGHYNVQEYANRTIQMTANFE-GFPTPSFSWFKPDGTEVRQSENNFKILSTELSTMLQVLNAQ 507
            |||....|...:..|::::.:.. |.||....|.| ||..:..|.   :||..  ...||||||.
  Rat    40 EPSQQEQVAFGSGDTVELSCHPPGGAPTGPTLWAK-DGVGLVASH---RILVG--PQRLQVLNAT 98

  Fly   508 LQDSGTYVLRGSNSFGVVQR-------EYNVSVMDAPAL----KMSDAYVQVGS-----VARLEC 556
            .:|:|.|..:        ||       .::|.|.|||:.    ...|.....|:     ..|::.
  Rat    99 HEDAGVYSCQ--------QRLTRRVLCHFSVRVTDAPSSGDDEDGEDVAEDTGAPYWTRPERMDK 155

  Fly   557 TVRSYPPAIVTFFFRPCSLEPQWPTCSVLNQNFSLPSEQEKYQFQTRPRPGKLSVERIYEVSFLP 621
            .:.:.|.|....|..|.:..|. |:.|.|........|......:.|.:...|.:|     |.:|
  Rat   156 KLLAVPAANTVRFRCPAAGNPT-PSISWLKNGKEFRGEHRIGGIKLRHQQWSLVME-----SVVP 214

  Fly   622 TEPGILTCIAQNIIDGKERRTLT------KAH--VLLGNISENMT-IYGFDKDHKIAKEDNVNFT 677
            ::.|..||:.:|.. |..|:|.|      ..|  :|...:..|.| :.|.|          |.|.
  Rat   215 SDRGNYTCVVENKF-GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSD----------VEFH 268

  Fly   678 CEALAYHFDGNLKWFINGEDLKESDSVHIETSHTKYSYKSTVHIT-------------------T 723
            |:..: ....:::|      ||     |:|.:.:|.....|.::|                   .
  Rat   269 CKVYS-DAQPHIQW------LK-----HVEVNGSKVGPDGTPYVTVLKSWISENVEADARLRLAN 321

  Fly   724 ISDRDRGTYECRAYHNDKDAVYSSREIDLYVHDPSAPQWTNGGQEGHSKIKRKLSQTLELECAST 788
            :|:||.|.|.|||   ......:.:...|.||.|.|                             
  Rat   322 VSERDGGEYLCRA---TNFIGVAEKAFWLRVHGPQA----------------------------- 354

  Fly   789 AVPVAIVRWFKDDKEVTESKLRHIIEKESKLLITHLYPGDEGVYKCVVENRLDRIERSFTVVISD 853
                            .|.:|..:.|..|      :|.|                      |:| 
  Rat   355 ----------------AEEELMEVDEAGS------VYAG----------------------VLS- 374

  Fly   854 LPGISMAWVWFGVILFLILIGLCVFLAVRYQKEHKRHLA-----------LKAAGLANFEEGAVG 907
                      :||..||.::.:......|.:...|:.|.           ||...: :.|..:..
  Rat   375 ----------YGVGFFLFILVVAAVTLCRLRSPPKKGLGSPTVHKVSRFPLKRQQV-SLESNSSM 428

  Fly   908 HINPDL------------TLDEQAEL-LPYNREFEFPRENLKLGKQLGAGAFGVVLKGEAKGIRR 959
            :.|..|            .|...:|| ||.:.::|..|..|.|||.||.|.||.|:..||.||.:
  Rat   429 NSNTPLVRIARLSSGEGPVLANVSELELPADPKWELSRTRLTLGKPLGEGCFGQVVMAEAIGIDK 493

  Fly   960 EEPT--TTVAVKMVKATADNEVVRALVSELKIMVHLGQHLNVVNLLGAVTKNIAKRELMVIVEYC 1022
            :...  .||||||:|..|.::.:..||||:::|..:|:|.|::|||||.|:.   ..|.|:|||.
  Rat   494 DRTAKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQG---GPLYVLVEYA 555

  Fly  1023 RFGNIQNFLLRNRKCFINQINPDTDHIDPSIMTQRMSDNYELHRDTNGGGLKYANVGFPIHSYIN 1087
            ..||::.||...|                                                    
  Rat   556 AKGNLREFLRARR---------------------------------------------------- 568

  Fly  1088 EPHNNNTQPPTHRRNSDNDPRSGTRAGRTGSGTATYSYDRQMDTCATVMTTVPEDDQIMSNNSVQ 1152
                    ||                          ..|...|.|     .:||:.         
  Rat   569 --------PP--------------------------GMDYSFDAC-----RLPEEQ--------- 585

  Fly  1153 PAWRSNYKTDSTEAMTVTTVDLISWAFQVARGMDYLSSKKVLHGDLAARNILLCEDNVVKICDFG 1217
                            :|..||:|.|:||||||:||:|:|.:|.||||||:|:.||||:||.|||
  Rat   586 ----------------LTCKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFG 634

  Fly  1218 LARSMYRGDNYKKSENGKLPIKWLALESLSDHVFSTYSDVWSYGIVLWEMFSLAKVPYPGIDPNQ 1282
            |||.::..|.|||:.||:||:||:|.|:|.|.|::..|||||:|::|||:|:|...||||| |.:
  Rat   635 LARDVHNLDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGI-PVE 698

  Fly  1283 ELFNKLNDGYRMEKPKFANQELYEIMLECWRKNPESRPLFAELEKRFANMLGEDVASHYLDLNNP 1347
            |||..|.:|:||:||.....:||.||.|||...|..||.|.:|.:....:|.......||||:.|
  Rat   699 ELFKLLKEGHRMDKPANCTHDLYMIMRECWHAVPSQRPTFKQLVEDLDRILTVTSTDEYLDLSVP 763

  Fly  1348 YMQ 1350
            :.|
  Rat   764 FEQ 766

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG_like 346..432 CDD:214653
Ig strand C 363..366 CDD:409353
Ig strand E 396..400 CDD:409353
Ig strand F 410..415 CDD:409353
Ig strand G 425..428 CDD:409353
Ig 458..533 CDD:472250 23/82 (28%)
Ig strand B 459..463 CDD:409353 0/3 (0%)
Ig strand C 472..476 CDD:409353 0/3 (0%)
Ig strand E 497..503 CDD:409353 1/5 (20%)
Ig strand F 513..518 CDD:409353 1/4 (25%)
Ig 671..>742 CDD:472250 19/89 (21%)
Ig strand B 674..678 CDD:409353 2/3 (67%)
Ig strand C 687..691 CDD:409353 0/3 (0%)
Ig strand E 717..721 CDD:409353 1/3 (33%)
Ig strand F 731..736 CDD:409353 2/4 (50%)
Ig 779..851 CDD:472250 6/71 (8%)
Ig strand B 781..785 CDD:409570 0/3 (0%)
Ig strand C 794..798 CDD:409570 0/3 (0%)
Ig strand E 816..821 CDD:409570 1/4 (25%)
Ig strand F 831..836 CDD:409570 0/4 (0%)
Ig strand G 844..847 CDD:409570 0/2 (0%)
Protein Kinases, catalytic domain 927..1332 CDD:473864 143/406 (35%)
Fgfr3XP_006251454.1 IG_like 52..123 CDD:214653 23/84 (27%)
Ig strand B 55..59 CDD:409358 0/3 (0%)
Ig strand C 69..73 CDD:409358 0/3 (0%)
Ig strand E 91..94 CDD:409358 1/2 (50%)
Ig strand F 104..108 CDD:409358 1/3 (33%)
IgI_2_FGFR 145..239 CDD:409443 23/100 (23%)
Ig strand A 145..148 CDD:409443 0/2 (0%)
Ig strand A' 156..161 CDD:409443 0/4 (0%)
Ig strand B 165..173 CDD:409443 2/7 (29%)
Ig strand C 179..184 CDD:409443 1/4 (25%)
Ig strand C' 187..189 CDD:409443 0/1 (0%)
Ig strand D 198..201 CDD:409443 0/2 (0%)
Ig strand E 205..210 CDD:409443 1/4 (25%)
Ig strand F 219..226 CDD:409443 2/6 (33%)
Ig strand G 229..239 CDD:409443 4/9 (44%)
IgI_3_FGFR 247..347 CDD:409363 24/124 (19%)
Ig strand A 247..250 CDD:409363 0/2 (0%)
Ig strand A' 254..258 CDD:409363 1/3 (33%)
Ig strand B 266..273 CDD:409363 2/6 (33%)
Ig strand C 277..284 CDD:409363 3/17 (18%)
Ig strand D 299..304 CDD:409363 1/4 (25%)
Ig strand E 315..320 CDD:409363 0/4 (0%)
Ig strand F 328..336 CDD:409363 5/10 (50%)
Ig strand G 339..347 CDD:409363 0/7 (0%)
PTKc_FGFR3 456..789 CDD:173652 152/431 (35%)
Blue background indicates that the domain is not in the aligned region.

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