DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pvr and ntrk3b

DIOPT Version :10

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:XP_002662799.4 Gene:ntrk3b / 798577 ZFINID:ZDB-GENE-010126-4 Length:818 Species:Danio rerio


Alignment Length:952 Identity:194/952 - (20%)
Similarity:321/952 - (33%) Gaps:357/952 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   483 VRQSENNFKILSTELSTMLQVLNAQLQ----DSGTYV-------LRGSNSFGVVQ---------- 526
            :..|.|....||.:|...||::..:|:    |.|..:       |||.......|          
Zfish   132 INLSRNPLASLSWQLFQHLQLVELRLEGVVFDCGCKIRWIQLWRLRGEAGLHTQQLYCKDGASKI 196

  Fly   527 --REYNVSVMDAPALKMSDAYVQV--GSVARLECTVRSYPPAIVTFFFRPCSLEPQWPTCSVLNQ 587
              |..:::..|...:.::.:.:.|  |....|.|.....|..           |..|..      
Zfish   197 SLRSMSIAHCDLQDISVAHSNLTVLEGGNVTLSCNGSGSPVP-----------EVDWAV------ 244

  Fly   588 NFSLPSEQEKYQFQTRPRPGKLSVERIYEVSFLPTEPGI---------------LTCIAQNIIDG 637
                              .|..|:.......:||....|               ||||::|::. 
Zfish   245 ------------------KGLHSINTHQSTVYLPNTHSINLTLVNVSRDDNGFVLTCISENVVG- 290

  Fly   638 KERRTLTKAHVLLGNISENMTIYGFDKDHKIAKEDNVNFTCEALAYHFDG----NLKWFINGEDL 698
                        :.|:|..:::.......|:.:.:..:.||  :.:...|    .|.||..|.::
Zfish   291 ------------MNNVSLQLSVLFPPVILKLDEPERRHHTC--IEFTVRGFPHPTLHWFYKGREI 341

  Fly   699 KESDSVHIETSHTKYSYKSTVHITTISDRDRGTYECRAYHNDKDAVYSSREIDLYVHDPSAPQWT 763
            .:|:.:.:|..:.|...:..:.....:..|.|.|...| .|...:|  |:.:..:..||.     
Zfish   342 LQSEYIRMEMDYYKDYLEGCLTFENPTHYDNGNYTLVA-TNSLGSV--SKTVFGHFLDPP----- 398

  Fly   764 NGGQEGHSKIKRKLSQTLELECASTAVPVAIVRWFKDDKEVTESKLRHIIEKESKLLITHLY--- 825
                                              |.:|..:.|                  |   
Zfish   399 ----------------------------------FMEDDGIME------------------YTPP 411

  Fly   826 PGDEGVYKCVVENRLDRIERSFTVVISDLPGISMAWVWFGVILFLILIGL----CVFLAV----- 881
            |.|||          .|.|.||        |:|:|            :||    ||||.|     
Zfish   412 PEDEG----------KRPEDSF--------GMSIA------------VGLAGFGCVFLIVIFVLI 446

  Fly   882 -RYQKEHKRHLALKAAGLANFEEGA--VGHIN------------PD--------LTLDEQAELLP 923
             :|.:.:|..:....|.::..|:.|  :.|:|            ||        :.:.|..:...
Zfish   447 NKYSRRNKFGIKGPVAVISGEEDSASPLHHVNHGIVTPCSLDAGPDAVVIGMSRIPVIENPQYFR 511

  Fly   924 YNREFEFP--------RENLKLGKQLGAGAFGVVLKGEAKGIRREEPTTTVAVKMVK---ATADN 977
            :......|        |.::.|.::||.||||.|...|...:...:....||||.:|   .||..
Zfish   512 HGHNCNKPTTYVQHIKRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKTLKDPTLTARK 576

  Fly   978 EVVRALVSELKIMVHLGQHLNVVNLLGAVTKNIAKRELMVIVEYCRFGNIQNFLLRNRKCFINQI 1042
            :..|    |.:::.:| ||.::|...|..   :....|:::.||.:.|::..||..:        
Zfish   577 DFQR----EAELLTNL-QHEHIVKFYGVC---VDGDPLIMVFEYMKHGDLNKFLRAH-------- 625

  Fly  1043 NPDTDHIDPSIMTQRMSDNYELHRDTNGGGLKYANVGFPIHSYINEPHNNNTQPPTHRRNSDNDP 1107
            .||...:   :..|.|..|.||       ||.                                 
Zfish   626 GPDAMIL---VDGQPMQSNGEL-------GLS--------------------------------- 647

  Fly  1108 RSGTRAGRTGSGTATYSYDRQMDTCATVMTTVPEDDQIMSNNSVQPAWRSNYKTDSTEAMTVTTV 1172
                                ||...||                                      
Zfish   648 --------------------QMLHIAT-------------------------------------- 654

  Fly  1173 DLISWAFQVARGMDYLSSKKVLHGDLAARNILLCEDNVVKICDFGLARSMYRGDNYKKSENGKLP 1237
                   |:|.||.||||:..:|.|||.||.|:....:|||.|||::|.:|..|.|:...:..||
Zfish   655 -------QIAAGMVYLSSQHFVHRDLATRNCLVGNGLLVKIGDFGMSRDIYSSDYYRVGGHTMLP 712

  Fly  1238 IKWLALESLSDHVFSTYSDVWSYGIVLWEMFSLAKVPYPGIDPNQELFNKLNDGYRMEKPKFANQ 1302
            |:|:..||:....|||.|||||:|:::||:|:..|.|:..:. |.|:...:..|..:::|:...:
Zfish   713 IRWMPPESIMYRKFSTESDVWSFGVIMWEIFTYGKQPWFHLS-NNEVIECITQGRVLDRPRLCPK 776

  Fly  1303 ELYEIMLECWRKNPESRPLFAELEKRFANMLGEDVASHYLDL 1344
            |:|::||.||::.|:.|....:::| ....||: ....|||:
Zfish   777 EVYDLMLGCWQREPQQRLNIKDIQK-VLYALGK-ATPVYLDI 816

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG_like 346..432 CDD:214653
Ig strand C 363..366 CDD:409353
Ig strand E 396..400 CDD:409353
Ig strand F 410..415 CDD:409353
Ig strand G 425..428 CDD:409353
Ig 458..533 CDD:472250 15/72 (21%)
Ig strand B 459..463 CDD:409353
Ig strand C 472..476 CDD:409353
Ig strand E 497..503 CDD:409353 2/5 (40%)
Ig strand F 513..518 CDD:409353 1/11 (9%)
Ig 671..>742 CDD:472250 15/74 (20%)
Ig strand B 674..678 CDD:409353 0/3 (0%)
Ig strand C 687..691 CDD:409353 2/7 (29%)
Ig strand E 717..721 CDD:409353 0/3 (0%)
Ig strand F 731..736 CDD:409353 1/4 (25%)
Ig 779..851 CDD:472250 12/74 (16%)
Ig strand B 781..785 CDD:409570 0/3 (0%)
Ig strand C 794..798 CDD:409570 0/3 (0%)
Ig strand E 816..821 CDD:409570 0/4 (0%)
Ig strand F 831..836 CDD:409570 0/4 (0%)
Ig strand G 844..847 CDD:409570 1/2 (50%)
Protein Kinases, catalytic domain 927..1332 CDD:473864 102/415 (25%)
ntrk3bXP_002662799.4 LRR_8 103..159 CDD:404697 8/26 (31%)
leucine-rich repeat 105..128 CDD:275378
leucine-rich repeat 129..151 CDD:275378 5/18 (28%)
LRRCT_2 164..207 CDD:465313 6/42 (14%)
ig 213..298 CDD:395002 19/132 (14%)
Ig strand B 226..230 CDD:409405 1/3 (33%)
Ig strand C 239..249 CDD:409405 3/33 (9%)
Ig strand E 265..269 CDD:409405 1/3 (33%)
Ig strand F 279..285 CDD:409405 3/5 (60%)
Ig strand G 293..296 CDD:409405 1/2 (50%)
IgI_TrKABC_d5 303..395 CDD:409360 18/96 (19%)
Ig strand A 304..310 CDD:409360 1/5 (20%)
Ig strand A' 312..315 CDD:409360 0/2 (0%)
Ig strand B 318..326 CDD:409360 2/9 (22%)
Ig strand C 329..336 CDD:409360 2/6 (33%)
Ig strand C' 339..342 CDD:409360 0/2 (0%)
Ig strand D 347..353 CDD:409360 1/5 (20%)
Ig strand E 357..365 CDD:409360 0/7 (0%)
Ig strand F 373..381 CDD:409360 3/8 (38%)
Ig strand G 384..392 CDD:409360 2/9 (22%)
PTKc_TrkC 525..811 CDD:270676 103/412 (25%)
Blue background indicates that the domain is not in the aligned region.

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