DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pvr and ntrk2a

DIOPT Version :10

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:NP_001353483.1 Gene:ntrk2a / 65090 ZFINID:ZDB-GENE-010126-1 Length:791 Species:Danio rerio


Alignment Length:962 Identity:203/962 - (21%)
Similarity:347/962 - (36%) Gaps:331/962 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   531 VSVMDAPALKMSDAYVQVGSVARLECTVRSYPPAIVTF---------FFRPCSLEPQWPTCSVLN 586
            :|.:||....|  |:.::.|.|.:|.....|....::|         |:|  ||.    ..:|:|
Zfish    37 ISCVDAERSIM--AFPKLESEADMENVTDIYIANQISFTSINERDLEFYR--SLR----NLTVIN 93

  Fly   587 QNFSLPSEQEKYQFQTRPRPGKLSVE------------RIYEVSFLPTEPGILTCIAQN------ 633
            ...:..:   :..||:.|:...|:::            |...:|:|......|.|:..|      
Zfish    94 TKLAYIA---RLAFQSNPKLQYLNLKENNLSKLSWRTFRHLNISYLLLAGNPLQCLCDNMWLKQW 155

  Fly   634 ----------IIDGKERR---TLTKAHVLLGNIS---ENMTIYGFDKDHKIAKEDNVNFTCEALA 682
                      :.:|.:||   |||....:|..::   .|:|         :.|..||..||..  
Zfish   156 RVEEAEELLCVEEGGKRRALATLTLPDCVLPTVTLTPTNVT---------MKKGLNVTLTCNT-- 209

  Fly   683 YHFDG----NLKWF---INGEDLKESDSVHIETSHTKYSYKSTVHITTISDRDRGTYECRAYHND 740
               .|    ||.|.   :|.. .||..|..|..|..|        :|.:|..|.   :||.....
Zfish   210 ---SGMPTPNLTWTTCKLNSA-FKEEGSGQISRSQLK--------LTNVSSLDN---KCRITCRS 259

  Fly   741 KDAVYSSR---EIDLYVHDPSAPQWTNGGQEGHSKIKRKLSQTLELECASTAVPVAIVRWFKDDK 802
            .:.|..|.   |:|: :..|...:.|:...:.|..|...:|..          |...:||..|::
Zfish   260 DNMVGESEASVELDI-LFPPVISKLTDAIPDHHWCIPFSVSGN----------PKPKLRWLLDEQ 313

  Fly   803 EVTESKLRHII-------EKESKLLI---THLYPGDEGVYKCVVENRLDRIERS----------- 846
            .:.|.|..|.:       |....|.:   ||:   :.|:|..:..|:.....::           
Zfish   314 PIQEGKFIHTMIHDYSEGEYHGCLQLDSPTHI---NNGMYTLLARNQFGEDSKAVSAHFMHEPWN 375

  Fly   847 ------FTVVISDLP--------------GISMAWVWFGVILFLILIGLCVFLAVRYQKEHKRHL 891
                  :.....|.|              ||: |..:.|.:|.|:::        ::.:..|..:
Zfish   376 VSEPLYYDATTDDTPLGPPEDKVAVYVVVGIA-AITFTGFVLMLVIL--------KFGRNSKFGI 431

  Fly   892 ALKAAGLANFEEGA--VGHI----NPDLTLDEQAEL-------LPY--NREF------------- 928
            ...::.::|.::.|  :.|:    |...:.|..|:.       :|.  |.::             
Zfish   432 KGPSSVISNDDDSASPLHHVSNGSNTPSSSDMNADAVIIGMTKIPVIENPQYFRSTSSLLKSDTF 496

  Fly   929 --EFPRENLKLGKQLGAGAFGVVLKGEAKGIRREEPTTTVAVKMVKATADNEVVRALVSELKIMV 991
              ...|.|:.|.::||.||||.|...|...:..::....||||.:|..::| ..:....|.:::.
Zfish   497 VQHIKRHNIVLKRELGEGAFGKVFLAECYNLSADQEKILVAVKTLKEASEN-ARKDFHREAELLT 560

  Fly   992 HLGQHLNVVNLLGAVTKNIAKRELMVIVEYCRFGNIQNFLLRNRKCFINQINPDTDHIDPSIMTQ 1056
            :| ||.::|...|...::                                        ||.||. 
Zfish   561 NL-QHEHIVTFYGVCVES----------------------------------------DPLIMV- 583

  Fly  1057 RMSDNYELHRDTNGGGLKYANVGFPIHSYINEPHNNNTQPPTHRRNSDNDPRSGTRAGRTGSGTA 1121
               ..|.:|.|.|    |:.....|                                        
Zfish   584 ---FEYMMHGDLN----KFLRAHGP---------------------------------------- 601

  Fly  1122 TYSYDRQMDTCATVMTTVPEDDQIMSNNSVQPAWRSNYKTDSTEAMTVTTVDLISWAFQVARGMD 1186
                                |..:||:..:|            :...:|...::..|.|:|.||.
Zfish   602 --------------------DAVLMSDGQIQ------------QQAELTQSQMLHIAQQIAAGMV 634

  Fly  1187 YLSSKKVLHGDLAARNILLCEDNVVKICDFGLARSMYRGDNYKKSENGKLPIKWLALESLSDHVF 1251
            ||:|:..:|.|||.||.|:.|:.:|||.|||::|.:|..|.|:...:..|||:|:..||:....|
Zfish   635 YLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKF 699

  Fly  1252 STYSDVWSYGIVLWEMFSLAKVPYPGIDPNQELFNKLNDGYRMEKPKFANQELYEIMLECWRKNP 1316
            :|.|||||.|:||||:|:..|.|:..:. |.|:...:..|..:::|:...:|:|::||.||::.|
Zfish   700 TTESDVWSLGVVLWEIFTYGKQPWYQLS-NNEVIECITQGRVLQRPRTCPKEVYDLMLGCWQREP 763

  Fly  1317 ESRPLFAELEKRFANMLGEDVASHYLDLNNPYMQSNIEYMKKQSTDYLALMG 1368
            .:|....|:              |.|.||          :.|.|..||.::|
Zfish   764 HTRLNIKEI--------------HNLLLN----------LAKASPVYLDILG 791

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG_like 346..432 CDD:214653
Ig strand C 363..366 CDD:409353
Ig strand E 396..400 CDD:409353
Ig strand F 410..415 CDD:409353
Ig strand G 425..428 CDD:409353
Ig 458..533 CDD:472250 0/1 (0%)
Ig strand B 459..463 CDD:409353
Ig strand C 472..476 CDD:409353
Ig strand E 497..503 CDD:409353
Ig strand F 513..518 CDD:409353
Ig 671..>742 CDD:472250 20/77 (26%)
Ig strand B 674..678 CDD:409353 1/3 (33%)
Ig strand C 687..691 CDD:409353 3/7 (43%)
Ig strand E 717..721 CDD:409353 0/3 (0%)
Ig strand F 731..736 CDD:409353 1/4 (25%)
Ig 779..851 CDD:472250 14/98 (14%)
Ig strand B 781..785 CDD:409570 0/3 (0%)
Ig strand C 794..798 CDD:409570 1/3 (33%)
Ig strand E 816..821 CDD:409570 1/4 (25%)
Ig strand F 831..836 CDD:409570 1/4 (25%)
Ig strand G 844..847 CDD:409570 0/19 (0%)
Protein Kinases, catalytic domain 927..1332 CDD:473864 98/419 (23%)
ntrk2aNP_001353483.1 LRR_8 84..143 CDD:404697 12/67 (18%)
leucine-rich repeat 86..109 CDD:275378 5/29 (17%)
leucine-rich repeat 110..132 CDD:275378 2/21 (10%)
Ig 186..272 CDD:472250 25/111 (23%)
Ig strand B 203..207 CDD:409353 1/3 (33%)
Ig strand C 216..220 CDD:409353 2/3 (67%)
Ig strand E 239..243 CDD:409353 2/11 (18%)
Ig strand F 254..259 CDD:409353 1/4 (25%)
Ig strand G 267..270 CDD:409353 0/2 (0%)
Ig 277..370 CDD:472250 19/105 (18%)
Ig strand B 292..296 CDD:409353 1/3 (33%)
Ig strand C 305..309 CDD:409353 1/3 (33%)
Ig strand E 335..339 CDD:409353 1/3 (33%)
Ig strand F 349..354 CDD:409353 1/4 (25%)
Ig strand G 362..365 CDD:409353 0/2 (0%)
Protein Kinases, catalytic domain 499..788 CDD:473864 105/435 (24%)
Blue background indicates that the domain is not in the aligned region.

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