DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pvr and csf1ra

DIOPT Version :9

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:NP_571747.1 Gene:csf1ra / 64274 ZFINID:ZDB-GENE-001205-1 Length:977 Species:Danio rerio


Alignment Length:1313 Identity:294/1313 - (22%)
Similarity:469/1313 - (35%) Gaps:462/1313 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 IILDAQTSTTLKCEDDEPMSWWTSQSQYVHVKSFDNTEDPARPFGTSLHLIEVTADYVAAYYCVK 120
            :||::.:...|.||.|.|:::....::  |.:.........|.|    .:.:.|.|:...|.||.
Zfish    36 VILESGSPLQLVCEGDGPVTFLPRLAK--HKRYISKEVGKIRSF----RVEKTTVDFTGTYKCVY 94

  Fly   121 TSKFSQIAKEEQSDEAMIELVNQGYASSIYVYVND-------PDTKLVDSHNVVTARQYTDVVIP 178
            .:         .:|..:        :||::|:|.|       |.|.|     ....::..|:::|
Zfish    95 MN---------GNDSNL--------SSSVHVFVRDSRVLFVSPSTSL-----RYVRKEGEDLLLP 137

  Fly   179 CKPAMPD-TEVLLETSNGEMHSSKSVG---RYDPQRGFTIEIRSIVDG--GDYYCRPNPPFPHNE 237
            |....|: |:......||   |:...|   .|||::|  :.||::..|  .||.|..........
Zfish   138 CLLTDPEATDFTFRMDNG---SAAPYGMNITYDPRKG--VLIRNVHPGFNADYICCARIGGAEKV 197

  Fly   238 EEMTSIEVRFIATGLDIPRTQTTNMVYTYAPGVTDGDDEVLTVTNQSTGNLALIRGGDGTLSRER 302
            .::.||.:        |.|.:....||                         |.|.....|..||
Zfish   198 SKIFSINI--------IQRLRFPPYVY-------------------------LKRNEYVKLVGER 229

  Fly   303 ARRSPARLAPMNASPSPRPGQDGKPLPKPVIRSSVEHHVFTDTNFTLDCEQSAYVESVYGMEWFT 367
            .:.|.....|                                 ||            .|.:.|  
Zfish   230 LQISCTTNNP---------------------------------NF------------YYNVTW-- 247

  Fly   368 PSRDENRIFASQSRTDPKTRNSTHQTG-----RSTLTVLNAQPSDTGLYKCVTTDNSNQNVQRAT 427
                     ...||..||....:...|     .|.||:.:.|.|.||...|  |..:......:|
Zfish   248 ---------THSSRMLPKAEEKSTMEGDRLAIESILTIPSVQLSHTGNITC--TGQNEAGANSST 301

  Fly   428 YRIKVLKQNESYLNVGEPSGH------YNVQEYANRTIQMTANFEGF-PTPSFSWFKPDGTEVRQ 485
            .::.|::  |.|:.:......      .:::......:.:....|.: |..|..|..|.......
Zfish   302 TQLLVVE--EPYIRLSPKLSSKLTHRGLSIEVSEGDDVDLGVLIEAYPPLTSHKWETPTSHNASL 364

  Fly   486 SENNFKILSTELSTMLQVLNAQLQDSGTYVLRGSNSFGVVQREYNVSVMDAPALKMSDAYVQVGS 550
            .||.|...:.....:|.:.....::.|.|.|...||.......:::.:...|.     |.|:..:
Zfish   365 PENRFFNHNDRYEALLLLKRLNFEEIGQYTLNVKNSMKSASITFDIKMYTKPV-----ARVKWEN 424

  Fly   551 VARLECTVRSYP-PAIVTFFFRPCSLEPQWPTCSVLNQNFSLPSEQEKYQFQTRPRPGKLSVERI 614
            |..|.|....|| |:|:            |..|:                               
Zfish   425 VTTLSCRSYGYPAPSIL------------WYQCT------------------------------- 446

  Fly   615 YEVSFLPTEPGILTCIAQNIIDGKERRTLTKAHVLLGNISENMTIYGFDKDHKIAKEDNVNFTCE 679
                      ||.|...:|..|.:..:|.|                             |.|..|
Zfish   447 ----------GIRTTCPENTTDLQPIQTQT-----------------------------VEFQKE 472

  Fly   680 ALAYHFDGNLKWFINGEDLKESDSVHIETSHTKYSYKSTVHITTISDRDRGTYECRAYHNDKDAV 744
            :..                    :|.:|:            :.|:....|.|..|.|::      
Zfish   473 SFG--------------------AVGVES------------VLTVGPNRRMTVVCVAFN------ 499

  Fly   745 YSSREIDLYVHDPSAPQWTNGGQEGHSKIKRKLSQTLELECASTAVPVAIVRWFKDDKEVTESKL 809
                                        :..:.|.|..:|.:                       
Zfish   500 ----------------------------LVGQGSDTFSMEVS----------------------- 513

  Fly   810 RHIIEKESKLLITHLYPGDEGVYKCVVENRLDRIERSFTVVISDLPGISMAWVWFGVILFLILIG 874
                                           |:|   ||   |.:.|.::|.|..|::|      
Zfish   514 -------------------------------DQI---FT---SAMCGSTVAMVVLGLLL------ 535

  Fly   875 LCVFLAVRYQKEHKRHLALKAAGLANFEEGAVGHINPDLTLDEQAELLPYNREFEFPRENLKLGK 939
              :|:..:|:::.:..:..|.....|         ..:.|..:..: ||||.::||||:.|||||
Zfish   536 --IFMIYKYKQKPRYEIRWKIIEATN---------GNNYTFIDPTQ-LPYNEKWEFPRDKLKLGK 588

  Fly   940 QLGAGAFGVVLKGEAKGIRREEPTTTVAVKMVKATADNEVVRALVSELKIMVHLGQHLNVVNLLG 1004
            .|||||||.|::..|.|:.:|:..|.|||||:||:|..:...||:|||||:.|||||.|:|||||
Zfish   589 TLGAGAFGKVVEATAYGLGKEDNITRVAVKMLKASAHPDEREALMSELKILSHLGQHKNIVNLLG 653

  Fly  1005 AVTKNIAKRELMVIVEYCRFGNIQNFLLRNRKCFINQI-------NPDTDHIDPSIMTQRMSDNY 1062
            |.|..   ..::||.|||..|::.|||....:.|:|.:       .|.||:  .::.|:||    
Zfish   654 ACTHG---GPVLVITEYCCHGDLLNFLRSKAENFLNFVMTIPNFPEPMTDY--KNVSTERM---- 709

  Fly  1063 ELHRDTNGGGLKYANVGFPIHSYINEPHNNNTQPPTHRRNSDNDPRSGTRAGRTGSGTATYSYDR 1127
                                  ::                            |:.||.::...|.
Zfish   710 ----------------------FV----------------------------RSDSGISSTCSDH 724

  Fly  1128 QMDTCATVMTTVPEDDQIMSNNSVQPAWRSNYKTDSTEAMTVTTVDLISWAFQVARGMDYLSSKK 1192
            .:|  ...:|:.|.:..:.|::..|           .::..:...||:.::.|||:|:|:|::|.
Zfish   725 YLD--MRPVTSRPTNSALDSSSECQ-----------EDSWPLDMDDLLRFSSQVAQGLDFLAAKN 776

  Fly  1193 VLHGDLAARNILLCEDNVVKICDFGLARSMYRGDNYKKSENGKLPIKWLALESLSDHVFSTYSDV 1257
            .:|.|:||||:||....|.|||||||||.:....||....|.:||:||:|.||:.:.|::..|||
Zfish   777 CIHRDVAARNVLLTNSRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFECVYTVQSDV 841

  Fly  1258 WSYGIVLWEMFSLAKVPYPGIDPNQELFNKLNDGYRMEKPKFANQELYEIMLECWRKNPESRPLF 1322
            |||||:|||:|||.|.|||.|..:.:.:..:..||:|.:|.||..|:|.||..||..:...||.|
Zfish   842 WSYGIMLWEIFSLGKSPYPNILVDSKFYKMIKCGYQMSRPDFAPPEMYTIMKMCWNLDAAERPTF 906

  Fly  1323 AELEKRFANMLGE 1335
            :::.:....||||
Zfish   907 SKISQMIQRMLGE 919

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG 346..432 CDD:214652 19/90 (21%)
Ig <363..432 CDD:299845 16/73 (22%)
Ig 466..533 CDD:299845 14/67 (21%)
IG_like 672..754 CDD:214653 10/81 (12%)
Ig 674..739 CDD:143165 10/64 (16%)
IGc2 779..840 CDD:197706 2/60 (3%)
PKc_like 927..1332 CDD:304357 147/411 (36%)
Pkinase_Tyr 935..1329 CDD:285015 143/400 (36%)
csf1raNP_571747.1 IG_like 126..200 CDD:214653 19/78 (24%)
Ig_3 212..293 CDD:290638 27/163 (17%)
IG_like 222..306 CDD:214653 24/141 (17%)
Ig 311..410 CDD:299845 15/98 (15%)
Ig 427..509 CDD:143165 27/229 (12%)
Regulatory juxtamembrane domain. /evidence=ECO:0000250 544..576 7/41 (17%)
PTKc_CSF-1R 545..918 CDD:133237 155/454 (34%)
Pkinase_Tyr 584..913 CDD:285015 143/400 (36%)
Activation loop. /evidence=ECO:0000250 799..821 9/21 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 919..977 1/1 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 295 1.000 Domainoid score I1456
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D126783at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm25366
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.920

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