DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pvr and csf1rb

DIOPT Version :9

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:XP_009293978.1 Gene:csf1rb / 568405 ZFINID:ZDB-GENE-091118-1 Length:961 Species:Danio rerio


Alignment Length:1355 Identity:288/1355 - (21%)
Similarity:483/1355 - (35%) Gaps:490/1355 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 NGAPLMTPCKSAIILDAQTSTTLKCEDDEPMSWWTSQSQYVHVKSFDNTEDPARPFGTSLHLIEV 108
            ||.||.   .|.::|.|.||..|.|:....:.|.|.:.  :|.|:....|         |.:.:.
Zfish    27 NGTPLK---DSEVVLSANTSFVLHCDGQAEIIWKTRRR--IHQKNLSQNE---------LVVQKA 77

  Fly   109 TADYVAAYYCVKTSKFSQIAKEEQSDEAMIELVNQGYASSIYVYVNDPDTKLVDSH-NVVTARQY 172
            ||::...|.|...|                   :....|.|::||.|||.....|. .|:..::.
Zfish    78 TAEHTGTYRCSYRS-------------------HTDIYSEIHLYVKDPDKAFTTSQTRVIVIKEG 123

  Fly   173 TDVVIPCKPAMP-DTEVLLETSNGEMHSSKSVGRYDPQRGFTIEIRSIVDGGDYYCRPNPPFPHN 236
            :..::.|....| .||..|:.:||...........||:||..|........|||.|..|      
Zfish   124 SSFLLDCLLTNPAGTEFSLQMTNGSAVPPGMNYTADPRRGILIPNLQPSYTGDYVCMVN------ 182

  Fly   237 EEEMTSIEVRFIATGLDIPRTQTTNMVYTYAPGVTDGDDEVLTVTNQSTGNLALIRGGDGTLSRE 301
               |:.::.:                            .:|..:|        :|:         
Zfish   183 ---MSGVQWK----------------------------SKVFQIT--------VIK--------- 199

  Fly   302 RARRSPARLAPMNASPSPRPGQDGKPLPKPVIRSSVEHHVFTDTNFTLDCEQSAYVES---VYGM 363
            :|:..|:...|                       ::::......:..:.|    |:::   .|..
Zfish   200 KAQEPPSVSLP-----------------------ALQYVRIVGESLQIPC----YIQNHNHYYNF 237

  Fly   364 EWFTPSRDENRIFASQSRTDPKTRNSTHQTGRSTLTVLNAQPSDTGLYKCVTTDNSNQNVQRATY 428
            .|.:|.:..|     ..|...|.:..........||....:.|||....|...:.:.:|...|..
Zfish   238 TWSSPKKVLN-----FEREIKKKKKCEQVCATIYLTFQQLKMSDTENLTCTAMNEAGRNSSTAVL 297

  Fly   429 RIKVLKQNESYLNVGEPSGHYNVQEYANRTIQMTANFEGFPTPSFSWFKPDGTEVRQSENNFKIL 493
            |:    ..:.||.:                           ||                    ||
Zfish   298 RV----VEKPYLEL---------------------------TP--------------------IL 311

  Fly   494 STELSTMLQVLNAQLQDSGTYVLRGSNSFGVVQREYNVSVMDAPALKMSDAYVQVGSVARLECTV 558
            |:|..                    .|...||:..                    |....|...:
Zfish   312 SSEYK--------------------GNETNVVRMH--------------------GDQLELGVHI 336

  Fly   559 RSYPPAIVTFFFRPCSLEPQWPTCSVLNQNFSLPSEQEKYQFQTRPRPGKLSVERIYEVSFLPTE 623
            ::||             :.:|......:.|.|                        ||.:|    
Zfish   337 QAYP-------------DVEWAKWKTPSSNHS------------------------YEETF---- 360

  Fly   624 PGILTCIAQNIIDGKERRTLTKAHVLLGNISENMTIYGFDKDHKIAKEDNVNFTCEALAYHFDGN 688
                                                      |||                    
Zfish   361 ------------------------------------------HKI-------------------- 363

  Fly   689 LKWFINGEDLKESDSVHIETSHTKYSYKSTVHITTISDRDRGTYECRAYHNDKDA--VYSSREID 751
                                 |....|.:|:.:..:..:|.|.|...|.....:|  :::   :.
Zfish   364 ---------------------HDSDIYMATIRLKNVGAQDYGDYIFSAGSTSVNASIIFT---VH 404

  Fly   752 LYVHDPSAPQWTNGGQEGHSKIKRKLSQTLELECASTAVPVAIVRWFK--------DDKEVT--E 806
            :|....:..:|.||                .:.||:|..|:..::||:        .|...:  |
Zfish   405 VYQKPTTVIKWENG----------------VVSCAATGYPIPSIQWFQYEVNRALCSDNRTSGVE 453

  Fly   807 SKLRHIIEKES--------KLLITHLYPGDEGVYKCVVENRL--DRIERSFT------------- 848
            ......|.::|        |..:..:....:.:::||..|..  |....:||             
Zfish   454 LMANQSISEQSGEYEPVLVKSALPEITANADLIFECVATNTAGDDCDFYTFTFSGPRPTSVWSTS 518

  Fly   849 VVIS-DLPG-ISMAWVWFGVILFLILIGLCVFLAVRYQKEHKRHLALKAAGLANFEEGAVGHINP 911
            |:|| .|.| :|:|.:|..::|:            :.:|..|..:..|   :....:|      .
Zfish   519 VLISLGLSGALSVATLWMLILLY------------KNRKAQKYEIQWK---IIEVNDG------N 562

  Fly   912 DLTLDEQAELLPYNREFEFPRENLKLGKQLGAGAFGVVLKGEAKGIRREEPTTTVAVKMVKATAD 976
            :.|..:.:: ||||::.||||..||||:.|||||||.|::..|.|:.::|..|.|||||:|.:|.
Zfish   563 NYTFIDPSQ-LPYNKKLEFPRNKLKLGQVLGAGAFGKVVQATAIGLVKDETITRVAVKMLKPSAR 626

  Fly   977 NEVVRALVSELKIMVHLGQHLNVVNLLGAVTKNIAKRELMVIVEYCRFGNIQNFLLRNRKCFINQ 1041
            .|...||:|||||:.::|.|.|:||||||.|:.   ..:::|.|||..|::.|||.:..:.|:|.
Zfish   627 FEEREALMSELKILNYIGPHENIVNLLGACTQG---GPMLMITEYCCHGDLLNFLRQRVETFVNT 688

  Fly  1042 INPDTDHIDPSIMTQRMSDNYELHRDTNGGGLKYANVGFPIHSYINEPHNNNTQPPTHRRNSDND 1106
            :          :..|..:::..|:::..                |.:.|      |.....|..|
Zfish   689 V----------LGVQSFAEDSNLYKNVT----------------IQKQH------PARNAYSGLD 721

  Fly  1107 PRSGTRAGRTGSGTATYSYDRQMDTCATVMTTVPEDDQIMSNNSVQPAWRSNYKTDSTEAMTVTT 1171
            ....|.:|:                       :|::           .::.:...:....:::..
Zfish   722 SFRDTPSGQ-----------------------MPKE-----------PFQESCNEELENMLSLDN 752

  Fly  1172 VDLISWAFQVARGMDYLSSKKVLHGDLAARNILLCEDNVVKICDFGLARSMYRGDNYKKSENGKL 1236
            :||:.:::|||:|||:|:||..:|.||||||:|:.:..:||||||||||.:....||....|.:|
Zfish   753 MDLLMFSYQVAQGMDFLASKNCIHRDLAARNVLVADCRIVKICDFGLARDIMNDTNYVVKGNARL 817

  Fly  1237 PIKWLALESLSDHVFSTYSDVWSYGIVLWEMFSLAKVPYPGIDPNQELFNKLNDGYRMEKPKFAN 1301
            |:||::.||:.:.:::..|||||||::|||:|||...|||.:..:.:.:..:.|||.|.:|.||.
Zfish   818 PVKWMSPESIFECLYTVQSDVWSYGVLLWEIFSLGMSPYPNVAIDAQFYKMIKDGYHMPQPDFAP 882

  Fly  1302 QELYEIMLECWRKNPESRPLFAELEKRFANML----GEDVASHYLDLNNPYMQSN 1352
            .|:|.||..|||:.|.:||.||::.:..|.:|    .||..:.|.:|....|.::
Zfish   883 HEMYTIMKMCWRQEPTTRPTFADITELIAKLLPMQTSEDNETMYPELRRHLMANH 937

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG 346..432 CDD:214652 17/88 (19%)
Ig <363..432 CDD:299845 14/68 (21%)
Ig 466..533 CDD:299845 9/66 (14%)
IG_like 672..754 CDD:214653 8/83 (10%)
Ig 674..739 CDD:143165 7/64 (11%)
IGc2 779..840 CDD:197706 14/78 (18%)
PKc_like 927..1332 CDD:304357 139/404 (34%)
Pkinase_Tyr 935..1329 CDD:285015 134/393 (34%)
csf1rbXP_009293978.1 Ig 34..92 CDD:299845 18/87 (21%)
IG <49..103 CDD:214652 13/83 (16%)
IG_like 116..197 CDD:214653 21/125 (17%)
Ig_2 118..197 CDD:290606 20/123 (16%)
IG_like 210..299 CDD:214653 17/120 (14%)
Ig 222..296 CDD:143165 15/82 (18%)
Ig 318..405 CDD:299845 24/233 (10%)
Ig 422..496 CDD:299845 14/73 (19%)
PKc_like 548..914 CDD:304357 147/444 (33%)
Pkinase_Tyr 585..910 CDD:285015 134/393 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 49 1.000 Domainoid score I11782
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D126783at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm25366
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.920

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