DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pvr and pdgfrb

DIOPT Version :9

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:XP_021336701.1 Gene:pdgfrb / 559529 ZFINID:ZDB-GENE-030805-2 Length:1072 Species:Danio rerio


Alignment Length:1469 Identity:347/1469 - (23%)
Similarity:558/1469 - (37%) Gaps:486/1469 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 CGGENGAPLMTPCKSAIILDAQTSTTLKCEDDEPMSWWTSQSQYVHVKSFDNTEDPARPFGTSLH 104
            |.|.:|..| :|....|||...:|:::.|.....::|...:.:  ::..|...|..|.  .:.||
Zfish    32 CLGTSGLEL-SPSAPQIILSINSSSSITCSGWSNVTWRFRRDE--NIPDFRTEELSAS--SSVLH 91

  Fly   105 LIEVTADYVAAYYCV--KTSKFSQIAKEEQSDEAMIELVNQGYASSIYVYVNDPDTKLVDSHNVV 167
            |.:||..:...|.|.  ||::..::|                      |:|.|||...:::.:|:
Zfish    92 LEQVTWRHTGVYVCTEKKTNESREVA----------------------VFVPDPDVWFLENEHVM 134

  Fly   168 TARQYTDVVIPCKPAMPDTEVLLETSNGEMHSSKSVGRYDPQRGFTIEIRSIVDGGDYYCRPNPP 232
            ..:...:..|||....|...|.|...:.||...   |.|:|..|::    :.:|...|.|:..  
Zfish   135 VTKTREEGTIPCLVTNPSINVTLYERDTEMAVE---GSYNPSVGYS----AALDDRTYICKGE-- 190

  Fly   233 FPHNEEEMTSIEVRFIATGLDIPRTQTTNMVYTYAPGVTDGDDEVLTVTNQSTGNLALIRGGDGT 297
              .|.||..|                  ::.|.::         :|                   
Zfish   191 --LNGEEKES------------------DLFYVFS---------IL------------------- 207

  Fly   298 LSRERARRSPARLAP-MNASPSPRPGQDGKPLPKPVIRSSVEHHVFTDTNFTLDCEQSAYVESVY 361
                    :|..|.| :|||             |.|::..        ....::|       :|:
Zfish   208 --------APEALDPYINAS-------------KTVLKQG--------ETLNVNC-------TVH 236

  Fly   362 GME-----WFTPSRDENRIFASQSRTDPKTRNSTHQTGRSTLTVLNAQPSDTGLYKCVTTDNSNQ 421
            |:|     |..|::|...|       :|.|...:..:.||.|.:.:.....:|.|.|...:....
Zfish   237 GVELVFFSWDFPNKDMGGI-------EPLTDVLSSMSMRSCLNITDVSLDRSGQYVCHVHEGVQD 294

  Fly   422 NVQRATYRIKVLKQNESYLNVGEPSGHYNVQEYANRTIQMTANFEGFPTPSFSWFKPDGTEVR-- 484
              |||:..|.:....:.::::..|... |:.......:::....|.:|.|:..|.| ||..:|  
Zfish   295 --QRASASINITVLEKGFVSLTPPLDR-NISAQLGENVELKVEIEAYPKPTVQWRK-DGAVIRGH 355

  Fly   485 --QSENNFKILSTELSTMLQVLNAQLQDSGTYVLRGSNSFGVVQREYNVSVMDAPALK--MSDAY 545
              :.|:..:.:||     |.::..:||..|.               |.|:|.:..|||  :.|..
Zfish   356 SMREEHETRFVST-----LTLVRTRLQQMGL---------------YKVTVQNEDALKEMIFDLE 400

  Fly   546 VQVGSVARLECTVRSYPPAIVTFFFRPCSLEPQWPTCSVLNQNFSLPSEQEKYQFQTRPRPGKLS 610
            |:|             ||                                               
Zfish   401 VKV-------------PP----------------------------------------------- 405

  Fly   611 VERIYEVS--FLPTEPGILTCIAQNIIDGKERRTLTKAHVLLGNISENMTIYGFDKDHKIAKEDN 673
              :|.|:|  .||.:...:||:|:                            |..|.        
Zfish   406 --QITELSDHHLPEKKHAVTCVAE----------------------------GVPKP-------- 432

  Fly   674 VNFTCEALAYHFDGNLKWFINGEDLKESDSVHIETSHTKYSYKSTVHITTISDRDRGTYECRAYH 738
                          :::||       ..||:      |:.|.:|.|....:.|.:..|.:....:
Zfish   433 --------------SIQWF-------SCDSM------TRCSNRSAVWSPLVEDPESVTIQTNVTY 470

  Fly   739 NDKDAVYSSREIDLYVHDPSAPQWTNGGQEGHSKIKRKLSQTLELECASTAVPVAIVRWFKDDKE 803
            |      |:|                       ||.:.|||            |.:||       
Zfish   471 N------STR-----------------------KIHQVLSQ------------VTLVR------- 487

  Fly   804 VTESKLRHIIEKESKLLITHLYPGDEGVYKCVVENRLDRIERSFTVVISDLPGISMAWVWFGV-- 866
                         .:||          ..:|...|......|...:|.|.|  .|...|...|  
Zfish   488 -------------PQLL----------TIRCEASNERGARARDIRLVNSTL--FSQVAVLAAVLA 527

  Fly   867 ILFLILIGLCVFLAV-----RYQKEHKRHLALKAAGLANFEEGAVGHINPDLTLDEQAELLPYNR 926
            ::.:::|.:.:.:||     ||:...|   .:::..|...|...|..|:           |||:.
Zfish   528 LVVIVIISIIILIAVWRKKPRYEIRWK---VIESVSLDGHEYIYVDPIH-----------LPYDL 578

  Fly   927 EFEFPRENLKLGKQLGAGAFGVVLKGEAKGIRREEPTTTVAVKMVKATADNEVVRALVSELKIMV 991
            .:|.||::|.||:.||:||||.|::..|.|:...:..|.|||||:|:||.....:||:||||||.
Zfish   579 AWEMPRDSLVLGRTLGSGAFGRVVEATAYGLGISQSATKVAVKMLKSTARRSETQALMSELKIMS 643

  Fly   992 HLGQHLNVVNLLGAVTKNIAKRELMVIVEYCRFGNIQNFLLRNRKCFINQINPDTDHIDPSIMTQ 1056
            |||.|:|:||||||.||   :..|.::.||||:|::.::|.||:..|:... .|.:||...  ||
Zfish   644 HLGPHINIVNLLGACTK---QGPLYLVTEYCRYGDLVDYLHRNKHSFLQNF-ADKNHIANG--TQ 702

  Fly  1057 RMSDNYELHRDTNGGGLKYANVGFPIHSYINEPHNNNTQPPTHRRNSDNDPRSGTRAGRTGSGTA 1121
            ..:|        :..|.:|.:.|                       |:.|           .|..
Zfish   703 ICND--------SDSGKEYVSFG-----------------------SECD-----------GGYM 725

  Fly  1122 TYSYDRQMDTCATVMTTVPEDDQIMSNNSVQPA-WRSNYKTD--------------STEAMTVTT 1171
            ..:.|.|     |....:.|....:....:||: :.|.|:.|              .:::..::.
Zfish   726 DMTKDEQ-----TEYVPMQELADTIKYADIQPSPYESPYQQDIYQEQGHRVDHSLVISDSPVLSY 785

  Fly  1172 VDLISWAFQVARGMDYLSSKKVLHGDLAARNILLCEDNVVKICDFGLARSMYRGDNYKKSENGKL 1236
            .||:.:::|||:||::|:||..:|.||||||:|:||..:.|||||||||.:...:||....:..|
Zfish   786 TDLVGFSYQVAQGMEFLASKNCVHRDLAARNVLICEGKLAKICDFGLARDIMHDNNYISKGSTFL 850

  Fly  1237 PIKWLALESLSDHVFSTYSDVWSYGIVLWEMFSLAKVPYPGIDPNQELFNKLNDGYRMEKPKFAN 1301
            |:||:|.||:..::::|.||||||||:|||:|:|...|||.:..|:..::.|..||||.||.:|:
Zfish   851 PLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMNELFYSALKRGYRMAKPSYAS 915

  Fly  1302 QELYEIMLECWRKNPESRPLFAELEKRFANMLGEDVASHYLDLNNPYMQSN---IEYMKKQSTDY 1363
            .|:||:|.:||.:..|.||.|:.|.....|||.:.....|..:|:.:::|:   :..||.:....
Zfish   916 DEIYEVMRKCWDEKYEKRPEFSFLVHTMGNMLSDAYKKKYSQVNDSFLKSDHPAVARMKPRVPSP 980

  Fly  1364 LALMGSPD----ELAP------AAPRYVNGHIVPDIRIEELPDDYMEMSRDSDPDACTAIFSPTR 1418
            .....||.    ||.|      .||.  |.:|:|      :||...|.....:         ||.
Zfish   981 FPGAFSPQSPTPELTPRPQIDGEAPH--NEYIIP------IPDPKPEEETQDE---------PTA 1028

  Fly  1419 LEGESSDFPDFSSETTFNFPGARQSPTLSNNLNSGSSKP 1457
            .|..||.|.  |.|.|.:.......|.....|...|..|
Zfish  1029 AEIPSSSFS--SDEETVSMEAPSTEPEREELLTEHSGSP 1065

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG 346..432 CDD:214652 20/90 (22%)
Ig <363..432 CDD:299845 17/73 (23%)
Ig 466..533 CDD:299845 17/70 (24%)
IG_like 672..754 CDD:214653 13/81 (16%)
Ig 674..739 CDD:143165 10/64 (16%)
IGc2 779..840 CDD:197706 8/60 (13%)
PKc_like 927..1332 CDD:304357 151/419 (36%)
Pkinase_Tyr 935..1329 CDD:285015 148/408 (36%)
pdgfrbXP_021336701.1 Ig 226..307 CDD:325142 20/104 (19%)
Ig 309..403 CDD:325142 25/115 (22%)
Ig_3 404..>437 CDD:316449 12/131 (9%)
PKc_like 549..947 CDD:328722 161/464 (35%)
Trypan_PARP <980..1053 CDD:330686 22/91 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D126783at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm25366
orthoMCL 1 0.900 - - OOG6_106773
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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