DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pvr and csf1r

DIOPT Version :9

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:NP_001008181.1 Gene:csf1r / 493543 XenbaseID:XB-GENE-6257851 Length:935 Species:Xenopus tropicalis


Alignment Length:1456 Identity:337/1456 - (23%)
Similarity:517/1456 - (35%) Gaps:592/1456 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LLPLLLILRISWSDAVPLQQFSPDPDDSIENCGGENGAPLMTPCKSAIILDAQTSTTLKCEDDEP 73
            :|.||:...:.:..|.|:          |:. |||            ||:......||.|..::.
 Frog     5 VLALLVATIVYYGMATPV----------IKE-GGE------------IIVSPGDRVTLTCSGNQT 46

  Fly    74 MSW-------W-TSQSQYVHVKSFDNTEDPARPFGTSLHLIEVTADYVAAYYCV-KTSKFSQIAK 129
            :.|       | ..||:.:.|                |.:...|.....:|.|| ..:::|.:| 
 Frog    47 VKWDIRKSTKWIVKQSETISV----------------LEIKSATYKETKSYKCVYNDTRYSGMA- 94

  Fly   130 EEQSDEAMIELVNQGYASSIYVYVNDPD-TKLVDSHNVVTARQYTDVVIPC---KPAMPDTEVLL 190
                              |:::||.|.. :....|..||...:..|||:||   .|::|...:.|
 Frog    95 ------------------SVHLYVKDTSYSWSTFSGTVVKMEEGKDVVLPCLITDPSIPRANIQL 141

  Fly   191 ETSNGEMHSSKSVGRYDPQRGFTIEIRSIVDGGDYYCRPNPPFPHNEEEMTSIEVRFIATGLDIP 255
            |:|:  ::|:..  .:|..:||||....:.:.|.|.|:...    |.....|:|:|...  :::|
 Frog   142 ESSS--LNSANI--SFDYHKGFTIHGVQMENDGMYICKATV----NGHVRKSLEMRLFV--IEVP 196

  Fly   256 RTQTTNMVYTYAPGVTDGDDEVLTVTNQSTGNLALIRGGDGTLSRERARRSPARLAPMNASPSPR 320
            |         ..|.||                                      :.|.|.     
 Frog   197 R---------LPPNVT--------------------------------------MEPQND----- 209

  Fly   321 PGQDGKPLPKPVIRSSVEHHVFTDTNFTLDCEQSAYVESVYGMEWFTPSRDENRIFASQSRTDPK 385
                        ||...|       .|.:.|:.:..|..|  :.|.||:            ||..
 Frog   210 ------------IRIKGE-------AFKITCKATGKVLPV--LRWETPA------------TDYT 241

  Fly   386 TRNSTH-----QTGRSTLTVLNAQPSDTGLYKCV-----------TTDNSNQNVQRATYRIKVLK 434
            ..|:|.     .|..|||.:.....:|:|.|.|:           ....|...::....|:..|.
 Frog   242 VTNTTRLTLMDWTTTSTLYIHKVNFTDSGNYTCIGYYPSYASQLKRISTSLHVIEEGYVRLTTLG 306

  Fly   435 QNESYLNVGEPSGHYNVQEYANRTIQMTANFEGFPTP-SFSWF----------------KPDGTE 482
            .|...|..||.:         |.||.:.|    :|:. |::|.                ||||  
 Frog   307 NNRITLRAGEST---------NITILIDA----YPSQLSWAWIHENHGNQSNVSSQAVVKPDG-- 356

  Fly   483 VRQSENNFKILSTELSTMLQVLNAQLQDSGTYVLRGSNSFGVVQREYNVSVMDAPAL-----KMS 542
               ...|..||  :|:.:|:      .:.|:|.....|:.......:.: |::.|.:     .::
 Frog   357 ---HYRNVTIL--QLNRILE------YEEGSYTFTAQNARANASLAFKI-VLNRPPVVNKMWSIN 409

  Fly   543 DAYVQVGSVARLECTVRSYP-PAIVTFFFRPCSLEPQWPTCSVLNQNFSLPSEQEKYQFQTRPRP 606
            :.|.         ||...|| |.|            :|..||                      .
 Frog   410 NTYT---------CTASGYPLPKI------------EWSKCS----------------------E 431

  Fly   607 GKLSVERIYEVSFLPTEPGILTCIAQNIIDGKERRTLTKAHVLLGNISENMTIYGFDKDHKIAKE 671
            .|:..|                                       ||.:.||             
 Frog   432 NKICHE---------------------------------------NIKQPMT------------- 444

  Fly   672 DNVNFTCEALAYHFDGNLKWFINGEDLKESDSVHIETSHTKYSYKSTVHITTISDRDRGTYECRA 736
             |.|...|:                        |:..         |.:||:|        .|:|
 Frog   445 -NYNIIVES------------------------HLTV---------TQNITSI--------VCKA 467

  Fly   737 YHNDKDAVYSSREIDLYVHDPSAPQWTNGGQEGHSKIKRKLSQTLELECASTAVPVAIVRWFKDD 801
            :::..:   .|||::                         |.:|.|                   
 Frog   468 FNSVGE---DSREME-------------------------LPRTFE------------------- 485

  Fly   802 KEVTESKLRHIIEKESKLLITHLYPGDEGVYKCVVENRLDRIERSFT-VVISDLPGISMAWVWFG 865
                                               .:|.|: |:.|| :|||.|           
 Frog   486 -----------------------------------TSRPDQ-EKLFTPIVISSL----------- 503

  Fly   866 VILFLILIGLCVFLAVRYQKEHKRHLALKAAGLANFEEGAVGH----INPDLTLDEQAELLPYNR 926
             ||..|.|.|..||..:||::.|..:..:..      :.|.|:    |:|        ..||||.
 Frog   504 -ILAGIFIVLSAFLYYKYQQKPKYEIRWQII------QPAEGNNYTCIDP--------TQLPYND 553

  Fly   927 EFEFPRENLKLGKQLGAGAFGVVLKGEAKGIRREEPTTTVAVKMVKATADNEVVRALVSELKIMV 991
            ::||||.||:.||.|||||||.|::..|.|:..|:...||||||:|.:|..:.|.||:|||||:.
 Frog   554 KWEFPRTNLQFGKTLGAGAFGKVMEATAVGLGNEDSAVTVAVKMLKPSAHTDEVEALMSELKILS 618

  Fly   992 HLGQHLNVVNLLGAVTKNIAKRELMVIVEYCRFGNIQNFLLRNRKCFINQINPDTDHIDPSIMTQ 1056
            |||.|.|:||||||.|..   ..::||.|||.:|::.|||.:..:                ||.:
 Frog   619 HLGNHKNIVNLLGACTHG---GPILVITEYCHYGDLLNFLRKKAQ----------------IMNE 664

  Fly  1057 RMSDNYELHRDTNGGGLKYANVGFPIHSYINEPHNNNTQPPTHRRNSDNDPRSGTRAGRTGSGTA 1121
            ..|.:.|....|:.   .|.|:... |.||               .||        :|....||.
 Frog   665 MFSASLEEQSSTSS---DYKNMTIE-HKYI---------------KSD--------SGFLSKGTD 702

  Fly  1122 TYSYDRQMDTCATVMTTVPEDDQIMSNNSVQPAWRSNYKTDSTEAMTVTTVDLISWAFQVARGMD 1186
            :|...:.:.:.::      :.|.::.            :.|:.:.:.:...||:|::|||::||.
 Frog   703 SYVEMKPVSSLSS------QGDSLID------------EKDTDDMLPLDLYDLLSFSFQVSQGMS 749

  Fly  1187 YLSSKKVLHGDLAARNILLCEDNVVKICDFGLARSMYRGDNYKKSENGKLPIKWLALESLSDHVF 1251
            :||:|..:|.|:||||:|:....|||||||||||.:....||....|.:||:||:|.||:.|.|:
 Frog   750 FLSAKNCIHRDVAARNVLVSHGRVVKICDFGLARDIENDSNYVVKGNARLPVKWMAPESIFDCVY 814

  Fly  1252 STYSDVWSYGIVLWEMFSLAKVPYPGIDPNQELFNKLNDGYRMEKPKFANQELYEIMLECWRKNP 1316
            :..||||||||:|||||||.:.|||||..|::.:..:.:||:|:.|.:|..|:|.||..||...|
 Frog   815 TVQSDVWSYGILLWEMFSLGRSPYPGIMVNRKFYKMIKEGYKMDCPDYAPLEIYRIMKTCWDLEP 879

  Fly  1317 ESRPLFAELEKRFANMLGEDVASHYLDLNNPYMQSNIEYMKKQSTDYLALMGSPDELAPAAPRYV 1381
            ..||.|        |.:...::.....|||              .||                  
 Frog   880 TQRPTF--------NQISTLISKQINILNN--------------QDY------------------ 904

  Fly  1382 NGHIVPDIRIEELPDDYMEMSRDSDP 1407
             .:|..|.:::|.    ||..|:|.|
 Frog   905 -ANISEDQQVQEC----MENKRESQP 925

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG 346..432 CDD:214652 21/101 (21%)
Ig <363..432 CDD:299845 17/84 (20%)
Ig 466..533 CDD:299845 15/83 (18%)
IG_like 672..754 CDD:214653 13/81 (16%)
Ig 674..739 CDD:143165 9/64 (14%)
IGc2 779..840 CDD:197706 2/60 (3%)
PKc_like 927..1332 CDD:304357 151/404 (37%)
Pkinase_Tyr 935..1329 CDD:285015 146/393 (37%)
csf1rNP_001008181.1 IG 27..100 CDD:214652 20/119 (17%)
IG_like 114..192 CDD:214653 25/85 (29%)
Ig_3 200..275 CDD:372822 26/150 (17%)
Ig 298..397 CDD:386229 26/125 (21%)
Ig 411..480 CDD:386229 29/233 (12%)
PKc_like 523..897 CDD:389743 161/459 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 299 1.000 Domainoid score I1422
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D126783at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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