DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pvr and pdgfra

DIOPT Version :9

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:NP_571534.1 Gene:pdgfra / 386856 ZFINID:ZDB-GENE-990415-208 Length:1059 Species:Danio rerio


Alignment Length:1471 Identity:354/1471 - (24%)
Similarity:542/1471 - (36%) Gaps:538/1471 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 APLMTPCKSAIILDAQTSTTLKCEDDEPMSWWTSQSQYVHVKSFDNTEDPARP-FGTSLHLIEVT 109
            |||:.|.:.::.:...::..|.|.....:||    :..|.:.  |.|....:. |.:::.:...|
Zfish    11 APLIWPQRESMEVSLHSTFRLTCRGQTELSW----NGPVFID--DQTNSVKKGLFISTVTISNAT 69

  Fly   110 ADYVAAYYCVKTSKFSQIAKEEQSDEAMIELVNQGYASSIYVYVNDPDTKLVDS-----HNVVTA 169
            |.:...|.| .:..|:       |.|           |:||:||.||.|..|.|     ::|:|:
Zfish    70 AVHTGEYVC-SSEPFN-------STE-----------STIYIYVPDPQTPFVPSMTPFENHVLTS 115

  Fly   170 RQYTDVVIPCKPAMPDTEV-LLETSNGEMHSSKSVGRYDPQRGFTIEIRSIVDGGDYYCRPNPPF 233
              |.::.|||:...|...| |:.....::..|    .||.:|||.    .:...|.|.||   ..
Zfish   116 --YDEMEIPCRVTDPSASVSLIHMGTDQVMPS----AYDSKRGFI----GLFGAGTYVCR---AL 167

  Fly   234 PHNEEEMTSIEVRFIATGLDIPRTQTTNMVYTYAPGVTDGDDEVLTVTNQSTGNLALIRGGDGTL 298
            .|.:.. .|||.                                            ::.|..|  
Zfish   168 IHGQNH-DSIEY--------------------------------------------IVHGWTG-- 185

  Fly   299 SRERARRSPARLAPMNASPSPRPGQDGKPLPKPVIRSSVEHHVFTDTNFTLDC--EQSAYVESVY 361
                                   |.|.:     |...:|:..:......|:||  :.|..:|.  
Zfish   186 -----------------------GSDLR-----VELRAVKRTLLVGETITVDCVAKGSEVLED-- 220

  Fly   362 GMEWFTPSRDENRIFASQSRTDPKT--RNSTHQTGRSTLTVLNAQPSDTGLYKCVTTDNSNQNVQ 424
              .|..|.:..||        .|||  .|..:.....||||.||.|.|:|:|.|..||..:...|
Zfish   221 --HWKYPGKLANR--------GPKTVKENKLNLEIYYTLTVTNASPKDSGIYACSITDIMSNESQ 275

  Fly   425 RATYRIKVLKQNESYLN--VG--EPSGHYNVQEYANRTIQMTANFEGFPTPSFSWFK------PD 479
            .....|.|......::|  :|  |.:....|.|:       ..:.|.||.|..:|.|      .|
Zfish   276 TKELTITVYDHEFVHINPLIGPVETARLDEVPEF-------KVDIESFPAPKVTWLKDSSVLGDD 333

  Fly   480 GTEVRQSENNFKILSTELSTMLQVLNAQLQDSGTYVLRGSNSFGVVQREYNVSV-MDAPALKMSD 543
            ..|:  |....||..|....:|.::.|:.:|||.|.::.  ..|.:...|:..: :..|.:.:..
Zfish   334 TAEI--STTLLKIGETSYQGVLNLIRAKAEDSGNYTVKA--EIGSISTSYSFYLQVKVPPVIVDL 394

  Fly   544 AYVQVGSVARLE--CTVRSYP-PAIVTFFFRPCSLEPQWPTCSVLNQNFSLPSEQEKYQFQTRPR 605
            ..|..||.|..|  ||....| |            |..|..|..|....:..|       |..| 
Zfish   395 IDVHHGSAAGQEVVCTAGGSPFP------------EVDWDICKNLKHCANDSS-------QWMP- 439

  Fly   606 PGKLSVERIYEVSFLPTEPGILTCIAQNIIDGKERRTLTKAHVLLGNISENMTIYGFDKDHKIAK 670
                          ||.....:|...|..:|.         |:                      
Zfish   440 --------------LPINSTDITVELQMNVDN---------HI---------------------- 459

  Fly   671 EDNVNFTCEALAYHFDGNLKWFINGEDLKESDSVHIETSHTKYSYKSTVHITTISDRDRGTYECR 735
            |.::.|      :|.:|                              ||.:..::..|.|..   
Zfish   460 ESHIIF------HHLEG------------------------------TVAVRCLARNDMGVV--- 485

  Fly   736 AYHNDKDAVYSSREIDLYVHDPSAPQWTNGGQEGHSKIKRKLSQTLELECASTAVPVAIVRWFKD 800
                       |||:.|....|            ||::               .|..|::     
Zfish   486 -----------SREVKLMSSGP------------HSEL---------------TVAAAVL----- 507

  Fly   801 DKEVTESKLRHIIEKESKLLITHLYPGDEGVYKCVVENRLDRIERSFTVVISDLPGISMAWVWFG 865
                                                                             
Zfish   508 ----------------------------------------------------------------- 507

  Fly   866 VILFLILIGLCVFLAVRYQKEHKRHLALKAAGLANFEEGAVGHINPD----LTLDEQAELLPYNR 926
            |:|.:::|.|.|.:.:..||..           .......:..::||    :.:|...  |||:.
Zfish   508 VLLVIVIISLIVLVIIWKQKPR-----------YEIRWRVIESVSPDGHEYIYVDPMQ--LPYDS 559

  Fly   927 EFEFPRENLKLGKQLGAGAFGVVLKGEAKGIRREEPTTTVAVKMVKATADNEVVRALVSELKIMV 991
            .:||||:.|.||:.||:||||.|::|.|.|:.|.:|...|||||:|.||.:...:||:||||||.
Zfish   560 RWEFPRDGLVLGRVLGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMT 624

  Fly   992 HLGQHLNVVNLLGAVTKNIAKRELMVIVEYCRFGNIQNFLLRNRKCFINQ-------------IN 1043
            |||.|||:||||||.||:   ..:.:|.|||.:|::.|:|.:||..|:::             ||
Zfish   625 HLGPHLNIVNLLGACTKS---GPIYIITEYCFYGDLVNYLHKNRDGFLSRHTEKGKKDLDIFGIN 686

  Fly  1044 P---------------DTDHIDPSIMTQRMSDNYELHRDTNGGGLKYANVGFPIHSYINEPHNNN 1093
            |               ..|::|   |.|..:..|....:.|... ||:    ||.      .::.
Zfish   687 PADESSRSYVILSLEGKGDYMD---MKQADTMQYVPMLEMNEAS-KYS----PIQ------RSDY 737

  Fly  1094 TQPPTHRRNSDNDPRSGTRAGRTGSGTATYSYDRQMDTCATVMTTVPEDDQIMSNNSVQPAWRSN 1158
            ..||:||:.:|                                    |.:.::|:          
Zfish   738 DHPPSHRQFND------------------------------------EAESLLSD---------- 756

  Fly  1159 YKTDSTEAMTVTTVDLISWAFQVARGMDYLSSKKVLHGDLAARNILLCEDNVVKICDFGLARSMY 1223
               ||.|.:  ||:||:|:.:||||||::|:||..:|.||||||:||.:..:||||||||||.:.
Zfish   757 ---DSAEGL--TTMDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLSQGKIVKICDFGLARDIM 816

  Fly  1224 RGDNYKKSENGKLPIKWLALESLSDHVFSTYSDVWSYGIVLWEMFSLAKVPYPGIDPNQELFNKL 1288
            ..:||....:..||:||:|.||:.|::::|.||||||||:|||:|||...||||:..:...:||:
Zfish   817 HDNNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMVVDSSFYNKI 881

  Fly  1289 NDGYRMEKPKFANQELYEIMLECWRKNPESRPLFAELEKRFANMLGEDVASHYLDLNNPYMQS-- 1351
            ..||||.||:.|:.::||:|::||...||.||.|..|....|::|.......|..:|:.:::|  
Zfish   882 KSGYRMTKPEHASSDVYELMMKCWNSEPEKRPSFHSLSDTVASLLPSGFKRCYERVNHDFLKSDH 946

  Fly  1352 ---------------------NIEYMKKQSTDYLALMGSPDELAPAAPRYVNGHIVPDIRIEELP 1395
                                 |...||.:.:.:.....|.|          :|:|:|      ||
Zfish   947 PAVTRVQCIDNDDAYMGVLYKNQGKMKTRESGFDEQRLSSD----------SGYIIP------LP 995

  Fly  1396 D-------DYMEMSRDSDPDACTAIF------SPTRLEGES 1423
            |       ||.:.:|.|...:..:..      |.|:.|||:
Zfish   996 DLDPLSNEDYSKRNRHSSQTSEESAIDTGSSSSTTKREGET 1036

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG 346..432 CDD:214652 28/89 (31%)
Ig <363..432 CDD:299845 23/70 (33%)
Ig 466..533 CDD:299845 20/72 (28%)
IG_like 672..754 CDD:214653 11/81 (14%)
Ig 674..739 CDD:143165 7/64 (11%)
IGc2 779..840 CDD:197706 2/60 (3%)
PKc_like 927..1332 CDD:304357 165/432 (38%)
Pkinase_Tyr 935..1329 CDD:285015 160/421 (38%)
pdgfraNP_571534.1 IG_like 19..94 CDD:214653 18/99 (18%)
IG_like 199..283 CDD:214653 28/95 (29%)
Ig 203..285 CDD:299845 29/93 (31%)
Ig 288..387 CDD:299845 25/109 (23%)
Ig 389..491 CDD:299845 33/216 (15%)
PKc_like 530..928 CDD:304357 172/467 (37%)
Pkinase_Tyr 568..918 CDD:285015 159/417 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 975..1036 16/76 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 295 1.000 Domainoid score I1456
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D126783at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm25366
orthoMCL 1 0.900 - - OOG6_106773
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6217
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.850

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