DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pvr and fgfr2

DIOPT Version :9

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:XP_005169609.1 Gene:fgfr2 / 352940 ZFINID:ZDB-GENE-030323-1 Length:836 Species:Danio rerio


Alignment Length:803 Identity:216/803 - (26%)
Similarity:332/803 - (41%) Gaps:237/803 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   664 KDHKIAKEDNVNFTCEALAYHFDGN----LKWFINGEDLKESDSV---HIETSHTKYSYKSTVHI 721
            |.|.:...:.|.|.|.|.     ||    ::|..|.:..::.|.:   .:...|.      |:.:
Zfish   188 KLHAVPAANTVKFRCAAA-----GNPKPKMRWLKNAKPFRQEDRMGGYKVRLQHW------TLIM 241

  Fly   722 TTISDRDRGTYECRAYHNDKDAVYSSREIDLYVHDPSAPQWTNGGQEGHSKIKRKLSQTLELECA 786
            .::...|:|.|.| ...|...::..:..:|:....|..|....|..   :.:..::.|..:..|.
Zfish   242 ESVVPSDKGNYTC-LVENQYGSINHTYTLDVVERSPHRPILQAGLP---ANVTVQVGQDAKFVCK 302

  Fly   787 --STAVPVAIVRWFKDDKEVTESKLRHIIEKESK------------------------LLITHLY 825
              |.|.|  .::|           |:|..:..|:                        |::|::.
Zfish   303 VYSDAQP--HIQW-----------LQHYTKNGSRYGPDGLPYVRVLKSSGINSSDVEVLMLTNVT 354

  Fly   826 PGDEGVYKCVVENRLDRIERSFTVVI---------SDLPG--ISMAWVWFGVILFLILIGLCVFL 879
            ..|.|...|.|.|.:.....|..:::         :|.|.  :.:|....||.|...::.:.|..
Zfish   355 EEDAGEITCKVSNYIGEANNSCWLIVIPAETNPIETDYPPDYVEIAIYCIGVFLIACMVVIVVVC 419

  Fly   880 AVRYQKE----------HK--------RHLALKAAGLANFEEGAV--------GHINPDLTLDEQ 918
            .:|...:          ||        |.::..::...:.....|        .|.:|....|  
Zfish   420 RMRTSAKKPDFSSQPAVHKLTKQIPLRRQVSSDSSSSMSSSTPLVRITTRRSSAHDDPIPEYD-- 482

  Fly   919 AELLPYNREFEFPRENLKLGKQLGAGAFGVVLKGEAKGIRREEP--TTTVAVKMVKATADNEVVR 981
               ||.:..:||.|:.|.|||.||.|.||.|:..||.||.:::|  ..||||||:|..|..:.:.
Zfish   483 ---LPEDPRWEFSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLS 544

  Fly   982 ALVSELKIMVHLGQHLNVVNLLGAVTKNIAKRELMVIVEYCRFGNIQNFLLRNRKCFINQINPDT 1046
            .||||:::|..:|:|.|::|||||.|::   ..|.|||||...||::.:|...|           
Zfish   545 DLVSEMEMMKMIGRHKNIINLLGACTQD---GPLYVIVEYASKGNLREYLRARR----------- 595

  Fly  1047 DHIDPSIMTQRMSDNYELHRDTNGGGLKYANVGFPIHSYINEPHNNNTQPPTHRRNSDNDPRSGT 1111
                                                             ||              
Zfish   596 -------------------------------------------------PP-------------- 597

  Fly  1112 RAGRTGSGTATYSYDRQMDTCATVMTTVPEDDQIMSNNSVQPAWRSNYKTDSTEAMTVTTVDLIS 1176
                    ...||||                   ::..|.:|               :|..||:|
Zfish   598 --------GMEYSYD-------------------IARVSDEP---------------LTFKDLVS 620

  Fly  1177 WAFQVARGMDYLSSKKVLHGDLAARNILLCEDNVVKICDFGLARSMYRGDNYKKSENGKLPIKWL 1241
            ..:||||||:||:|:|.:|.||||||:|:.|.||:||.||||||.::..|.|||:.||:||:||:
Zfish   621 CTYQVARGMEYLASQKCIHRDLAARNVLVTESNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWM 685

  Fly  1242 ALESLSDHVFSTYSDVWSYGIVLWEMFSLAKVPYPGIDPNQELFNKLNDGYRMEKPKFANQELYE 1306
            |.|:|.|.|::..|||||:|:::||:|:|...||||| |.:|||..|.:|:||:||.....|||.
Zfish   686 APEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI-PVEELFKLLKEGHRMDKPANCTNELYM 749

  Fly  1307 IMLECWRKNPESRPLFAELEKRFANMLGEDVASHYLDLNNPYMQSNIEYMKKQSTDYLALMG--- 1368
            :|.:||......||.|.:|.:....:|.......||||..|..|.:..:...:|:   ...|   
Zfish   750 MMKDCWHAISSHRPTFKQLVEDLDRILTLATNEEYLDLCAPVEQYSPSFPDTRSS---CSSGDDS 811

  Fly  1369 --SPDELA--PAAPRY--VNGHI 1385
              |.|.||  |..|:|  :||.|
Zfish   812 VFSHDPLADEPCLPKYQHINGGI 834

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG 346..432 CDD:214652
Ig <363..432 CDD:299845
Ig 466..533 CDD:299845
IG_like 672..754 CDD:214653 17/88 (19%)
Ig 674..739 CDD:143165 15/71 (21%)
IGc2 779..840 CDD:197706 16/86 (19%)
PKc_like 927..1332 CDD:304357 141/406 (35%)
Pkinase_Tyr 935..1329 CDD:285015 138/395 (35%)
fgfr2XP_005169609.1 Ig 71..148 CDD:299845
IG_like 75..148 CDD:214653
Ig2_FGFR 187..271 CDD:143265 18/94 (19%)
IG_like 197..271 CDD:214653 16/85 (19%)
IG_like 286..380 CDD:214653 17/109 (16%)
Ig 294..381 CDD:299845 17/99 (17%)
PTKc_FGFR2 471..783 CDD:270679 147/436 (34%)
Pkinase_Tyr 496..772 CDD:285015 138/395 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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