DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pvr and tie1

DIOPT Version :9

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:XP_001334673.5 Gene:tie1 / 30746 ZFINID:ZDB-GENE-990415-55 Length:1122 Species:Danio rerio


Alignment Length:990 Identity:224/990 - (22%)
Similarity:364/990 - (36%) Gaps:339/990 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   450 NVQEYANRTIQMTANFEGFPTPSFSWFKPDGTEVRQSENN-----FKILSTELSTM-LQVLNAQL 508
            |::...|.:.::|.:..|.|.||..     ..|:|:.|:.     ..||.::.||. .::.....
Zfish   347 NLEGNLNSSHKITCSATGHPLPSHL-----SIELRKLESTVLKAFHTILDSKKSTAHFEIPRLSP 406

  Fly   509 QDSGTYVLRGSNSFGVVQREYNVSVMDAP----------------ALKMSDAYVQVGSVARLECT 557
            :.:|.:..|.|.:.|....::.::|.:.|                .:|..|:|...|        
Zfish   407 EHNGLWECRVSTNGGQDSLKFTLTVKEPPYPTAAPKLLLRSSRQLVVKAVDSYAGDG-------- 463

  Fly   558 VRSYPPAIVT-FFFRPCSLEPQWP------TCSVLNQNFSLPSEQEKYQFQTR-PRPGK-----L 609
                 |.:.| ..::..:.|..|.      :..:..||.. ||  .||..:.: .|||:     |
Zfish   464 -----PIVSTKLLYKQVNTEDSWSPIIVHGSDQITLQNLK-PS--TKYHVRVQLARPGEGGEGPL 520

  Fly   610 SVERIYEVSFLPTEPGILTCIAQNIIDGKERRTLTKAHVLLGNISEN----MTIYGFDKDHKIAK 670
            ..|.|.|...  .||.....|..:.::|   |.:|....|:|...|.    :.:||         
Zfish   521 GPEAIMETDC--PEPTARPEIDSSSLEG---RNVTLRWSLIGRFREASGFLVQLYG--------- 571

  Fly   671 EDNVNFTCEALAYHFDGNLKWFINGEDLKESDSVHIETSHTKY--SYKSTVHITTISDRDRGTYE 733
                       .|   |...|    |:....:.:.::..:.:|  :|::.|.:.........:  
Zfish   572 -----------PY---GEKLW----EETTFLNVLSVKLYNLEYHKNYQAVVRLVNCGSHGPPS-- 616

  Fly   734 CRAYHNDKDAVYSSREIDLYVHDPSAP---------------QW-----TNGGQEGHSKIKRKLS 778
             |.:|           |.:|...||:|               :|     .|||...:|...:.:.
Zfish   617 -RPHH-----------IHIYKQGPSSPRNVQADALSISAVRLRWQPPEDPNGGIVKYSIEYQPVG 669

  Fly   779 QTLELECASTAVPVAIVRWFKDD------KEVT--------ESKLRHI--IEKESKLLITHLYPG 827
            |:            ::..|...|      |:||        :.::|..  :..|....:....||
Zfish   670 QS------------SLHPWVDTDNGNKTTKDVTSLNGSTLYQFRVRAFSKVPGEWSSFVQAQTPG 722

  Fly   828 D---------EGVYKCVVENRLDRIERSFTVVISDLPGISMAWVWFGVILFLILIGLCVFLAVRY 883
            :         :.|.:.:.|:.    :..|.||.|           ..|....||:.|.....:|.
Zfish   723 EGLSSFIPTTQQVGRPLAEDH----QLLFAVVGS-----------VAVTCVTILLALLALFYIRK 772

  Fly   884 QKEHKRHLALKAAG-----LANFEEGAVGHINPDLTLDEQAELLPYNREFEFP---RENLKLGKQ 940
            ....:|......:|     :..|..|.       |||..:.:  |......:|   .|::|....
Zfish   773 SVLKRRRTFTYQSGSGEETILQFNSGT-------LTLTRRPK--PSPEPLTYPILEWEDIKFEDV 828

  Fly   941 LGAGAFGVVLKGEAK--GIRREEPTTTVAVKMVKATADNEVVRALVSELKIMVHLGQHLNVVNLL 1003
            :|.|.||.|:|...|  ||:     .:.|:||:|..|.....|....||:::..||||.|::||:
Zfish   829 IGEGNFGQVIKAMVKKDGIK-----MSAAIKMLKEFASENDHRDFAGELEVLCKLGQHTNIINLI 888

  Fly  1004 GAVTKNIAKRELMVIVEYCRFGNIQNFLLRNRKCFINQINPDTDHIDPSIMTQRMSDNYELHRDT 1068
            ||...   :..|.:.:||..:||:.:||.::|                                 
Zfish   889 GACEN---RGYLYIAIEYAPYGNLLDFLRKSR--------------------------------- 917

  Fly  1069 NGGGLKYANVGFPIHSYINEPHNNNTQPPTHRRNSDNDPRSGTRAGRTGSGTATYSYDRQMDTCA 1133
                                                                             
Zfish   918 ----------------------------------------------------------------- 917

  Fly  1134 TVMTTVPEDDQIMSNNSVQPAWRSNYKTDSTEAMTVTTVDLISWAFQVARGMDYLSSKKVLHGDL 1198
                 |.|.|         ||:...:.|    |.|:|:..|:.:|..||.||.|||.|:.:|.||
Zfish   918 -----VLETD---------PAFAKEHGT----ASTLTSQQLLQFAADVATGMHYLSDKQFIHRDL 964

  Fly  1199 AARNILLCEDNVVKICDFGLARSMYRGDN-YKKSENGKLPIKWLALESLSDHVFSTYSDVWSYGI 1262
            ||||:|:.::.|.||.||||:    ||:. |.|...|:||::|:|:|||:..|::|.|||||:|:
Zfish   965 AARNVLVGDNLVAKIADFGLS----RGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGV 1025

  Fly  1263 VLWEMFSLAKVPYPGIDPNQELFNKLNDGYRMEKPKFANQELYEIMLECWRKNPESRPLFA---- 1323
            :|||:.||...||.|: ...||:.||..|||||:|:..:.|:||:|.:|||..|..||.|:    
Zfish  1026 LLWEIVSLGGTPYCGM-TCAELYEKLPQGYRMEQPRNCDDEVYELMRQCWRDRPYERPPFSQISV 1089

  Fly  1324 ------ELEKRFANM 1332
                  |..|.:.||
Zfish  1090 QLNRMQEARKAYVNM 1104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG 346..432 CDD:214652
Ig <363..432 CDD:299845
Ig 466..533 CDD:299845 15/72 (21%)
IG_like 672..754 CDD:214653 10/83 (12%)
Ig 674..739 CDD:143165 8/66 (12%)
IGc2 779..840 CDD:197706 12/85 (14%)
PKc_like 927..1332 CDD:304357 122/420 (29%)
Pkinase_Tyr 935..1329 CDD:285015 120/406 (30%)
tie1XP_001334673.5 EGF_CA <219..244 CDD:238011
IG_like 346..431 CDD:214653 18/88 (20%)
fn3 <461..508 CDD:278470 11/62 (18%)
fn3 538..616 CDD:278470 16/107 (15%)
FN3 628..720 CDD:238020 16/103 (16%)
PKc_like 820..1116 CDD:304357 123/414 (30%)
Pkinase_Tyr 823..1091 CDD:285015 118/396 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0200
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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