DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pvr and Pdgfra

DIOPT Version :10

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:XP_038947553.2 Gene:Pdgfra / 25267 RGDID:3284 Length:1111 Species:Rattus norvegicus


Alignment Length:1466 Identity:339/1466 - (23%)
Similarity:551/1466 - (37%) Gaps:511/1466 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 PLMTPCKSAIILDAQTSTTLKCEDDEPMSWWTSQSQ----YVHVKSFDNTEDPARPFGTSLHLIE 107
            |.:.|.::..|:...:|.:|:|..:..:||....|:    .|.:::.:|.   :..|.|.|.::.
  Rat    50 PSILPNENEKIVPLSSSFSLRCFGESEVSWQHPMSEEEDPNVEIRTEENN---SSLFVTVLEVVN 111

  Fly   108 VTADYVAAYYCVKTSKFSQIAKEEQSDEAMIELVNQGYASSIYVYVNDPDTKLVD---SHNVVTA 169
            .:|.:...|.|        .....|::|:.||      ...||:||.|||...|.   :.::|..
  Rat   112 ASAAHTGWYTC--------YYNHTQTEESEIE------GRHIYIYVPDPDMAFVPLGMTDSLVIV 162

  Fly   170 RQYTDVVIPCKPAMPDTEVLLETSNGEMHSSKSVGRYDPQRGF--TIEIRSIVDGGDYYCRPNPP 232
            .:....:|||:...|||||.|. :||.:..:.    ||.::||  |..:      |.|.|     
  Rat   163 EEDDSAIIPCRTTDPDTEVTLH-NNGRLVPAS----YDSRQGFNGTFSV------GPYIC----- 211

  Fly   233 FPHNEEEMTSIEVRFIATGLDIPRTQTTNMVYTYAPGVTDGDDEVLTVTNQSTGNLALIRGGDGT 297
                  |.|   ||        .||..|:....||...|                          
  Rat   212 ------EAT---VR--------GRTFKTSEFNVYALKAT-------------------------- 233

  Fly   298 LSRERARRSPARLAPMNASPSPRPGQDGKPLPKPVIRSSVEHHVFTDTNFTLDCEQSAYV----- 357
                                                         ::.|..:|..|:.|.     
  Rat   234 ---------------------------------------------SELNLEMDTRQTVYKAGETI 253

  Fly   358 --------ESVYGMEWFTPSRDENRIFASQSRTDPKTRNSTHQTGRSTLTVLNAQPSDTGLYKCV 414
                    ..|..::|..|....|:...........:....:     ||||..|...|:|.|:|.
  Rat   254 VVTCAVFNNEVVDLQWTYPGEVRNKGITMLEEIKLPSIKLVY-----TLTVPKATVKDSGDYECA 313

  Fly   415 TTDNSNQNVQRATYRIKVLK------QNESYLNVGEPSGH------YNVQEYANRTIQMTANFEG 467
                    .::||..:|.:|      ..:.::.:....||      :.|:|:       ....:.
  Rat   314 --------ARQATKEVKEMKTVTISVHEKGFVQIRPTFGHLETVNLHQVREF-------VVEVQA 363

  Fly   468 FPTPSFSWFKPD----------GTEVRQSENNFKILSTELSTMLQVLNAQLQDSGTYVLRGSNSF 522
            :|||..||.|.:          .|:|::|:      .|...:.|:::.|:.:|||.|.:...|..
  Rat   364 YPTPRISWLKDNLTLIENLTEITTDVQRSQ------ETRYQSKLKLIRAKEEDSGHYTIIVQNDD 422

  Fly   523 GVVQREYNVS-VMDAPALKMSDAYVQVGSVARLECTVRSYPPAIVTFFFRPCSLEPQWPTCSVLN 586
            .:....:.:| ::.|..|::.|.:...|....:.||....|                        
  Rat   423 DMKSYTFELSTLVPASILELVDDHHGSGGGQTVRCTAEGTP------------------------ 463

  Fly   587 QNFSLPSEQEKYQFQTRPRPGKLSVERIYEVSFLPTEPGILTCIAQNIIDGKERRTLTKAHVLLG 651
                                             ||                              
  Rat   464 ---------------------------------LP------------------------------ 465

  Fly   652 NISENMTIYGFDKDHKIAKEDNVNFTCEALAYHFDGNLKWFINGEDLKESDSVHIETSHTKYSYK 716
                                                |::|.| .:|:|:.::   :||.|..:..
  Rat   466 ------------------------------------NIEWMI-CKDIKKCNN---DTSWTVLASN 490

  Fly   717 STVHITTISDRDRGTYECRAYHNDKDAVYSSREIDLYVHDPSAPQWTNGGQEGHSKIKRKLSQTL 781
            .:..||....|.|.|.|                                |:...:|::    :|:
  Rat   491 VSNIITEFHQRGRSTVE--------------------------------GRVSFAKVE----ETI 519

  Fly   782 ELECASTAVPVAIVRWFKDDKEVTESKLRHIIEKESKLLITHLYPGDEGVYKCVVENRLDRIERS 846
            .:.|.:           |:|..:.        .:|.||:...|                   ...
  Rat   520 AVRCLA-----------KNDLGIG--------NRELKLVAPTL-------------------RSE 546

  Fly   847 FTVVISDLPGISMAWVWFGVILFLILIGLCVFLAVRYQKEHKRHLALKAAGLANFEEGAVGHINP 911
            .||..:.|           |:|.::::.|.|.:.:..||..           .......:..|:|
  Rat   547 LTVAAAVL-----------VLLVIVIVSLIVLVVIWKQKPR-----------YEIRWRVIESISP 589

  Fly   912 D----LTLDEQAELLPYNREFEFPRENLKLGKQLGAGAFGVVLKGEAKGIRREEPTTTVAVKMVK 972
            |    :.:|...  |||:..:||||:.|.||:.||:||||.|::|.|.|:.|.:|...|||||:|
  Rat   590 DGHEYIYVDPMQ--LPYDSRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLK 652

  Fly   973 ATADNEVVRALVSELKIMVHLGQHLNVVNLLGAVTKNIAKRELMVIVEYCRFGNIQNFLLRNRKC 1037
            .||.:...:||:||||||.|||.|||:||||||.||:   ..:.:|.|||.:|::.|:|.:||..
  Rat   653 PTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKS---GPIYIITEYCFYGDLVNYLHKNRDS 714

  Fly  1038 FINQINPDTDHIDPSIMTQRMSD----NYELHRDTNGGGLKYANVGFPIHSYINEPHNNNTQ--P 1096
            |::: :|:....|..|.....:|    :|.:        |.:.|.|    .|::....:.||  |
  Rat   715 FMSR-HPEKPKKDLDIFGLNPADESTRSYVI--------LSFENNG----DYVDMKQADTTQYVP 766

  Fly  1097 PTHRRN----SDNDPRSGTRAGRTGSGTATYSYDRQMDTCATVMTTVPEDDQIMSNNSVQPAWRS 1157
            ...|:.    ||.......|       .|:|.....:|:         |...::|:         
  Rat   767 MLERKEVSKYSDIQRSLYDR-------PASYKKKSMLDS---------EAKNLLSD--------- 806

  Fly  1158 NYKTDSTEAMTVTTVDLISWAFQVARGMDYLSSKKVLHGDLAARNILLCEDNVVKICDFGLARSM 1222
                |.:|.:|:  :||:|:.:||||||::|:||..:|.||||||:||.:..:||||||||||.:
  Rat   807 ----DDSEGLTL--LDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDI 865

  Fly  1223 YRGDNYKKSENGKLPIKWLALESLSDHVFSTYSDVWSYGIVLWEMFSLAKVPYPGIDPNQELFNK 1287
            ....||....:..||:||:|.||:.|::::|.|||||||::|||:|||...||||:..:...:||
  Rat   866 MHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGVLLWEIFSLGGTPYPGMMVDSTFYNK 930

  Fly  1288 LNDGYRMEKPKFANQELYEIMLECWRKNPESRPLFAELEKRFANMLGEDVASHYLDLNNPYMQSN 1352
            :..||||.||..|..|:||||::||...||.||.|..|.:...|:|.......|..::..:::|:
  Rat   931 IKSGYRMAKPDHATSEVYEIMVQCWNSEPEKRPSFYHLSEIVENLLPGQYKKSYEKIHLDFLKSD 995

  Fly  1353 IEYMKKQSTD----YLALM------------GSPDELAPAAPRYVNGHIVPDIRIEELP--DDYM 1399
            ...:.:...|    |:.:.            |..||...:|.   :|:|:|...|:.:|  :|..
  Rat   996 HPAVARMRVDSDNAYIGVTYKNEEDKLKEWEGGLDEQRLSAD---SGYIIPLPDIDPVPEEEDLG 1057

  Fly  1400 EMSRDSDPDACTAIFSPTRLEGESSDFPDFSSETTF 1435
            :.:|.|...:            |.|.....||.:||
  Rat  1058 KRNRHSSQTS------------EESAIETGSSSSTF 1081

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG_like 346..432 CDD:214653 19/98 (19%)
Ig strand C 363..366 CDD:409353 0/2 (0%)
Ig strand E 396..400 CDD:409353 2/3 (67%)
Ig strand F 410..415 CDD:409353 2/4 (50%)
Ig strand G 425..428 CDD:409353 1/2 (50%)
Ig 458..533 CDD:472250 18/85 (21%)
Ig strand B 459..463 CDD:409353 0/3 (0%)
Ig strand C 472..476 CDD:409353 1/3 (33%)
Ig strand E 497..503 CDD:409353 1/5 (20%)
Ig strand F 513..518 CDD:409353 1/4 (25%)
Ig 671..>742 CDD:472250 14/70 (20%)
Ig strand B 674..678 CDD:409353 0/3 (0%)
Ig strand C 687..691 CDD:409353 1/3 (33%)
Ig strand E 717..721 CDD:409353 0/3 (0%)
Ig strand F 731..736 CDD:409353 2/4 (50%)
Ig 779..851 CDD:472250 10/71 (14%)
Ig strand B 781..785 CDD:409570 0/3 (0%)
Ig strand C 794..798 CDD:409570 0/3 (0%)
Ig strand E 816..821 CDD:409570 3/4 (75%)
Ig strand F 831..836 CDD:409570 0/4 (0%)
Ig strand G 844..847 CDD:409570 0/2 (0%)
Protein Kinases, catalytic domain 927..1332 CDD:473864 164/414 (40%)
PdgfraXP_038947553.2 None

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