DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pvr and Pdgfrb

DIOPT Version :10

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:NP_113713.1 Gene:Pdgfrb / 24629 RGDID:3285 Length:1097 Species:Rattus norvegicus


Alignment Length:1478 Identity:346/1478 - (23%)
Similarity:548/1478 - (37%) Gaps:488/1478 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LMTPCKSAIILDAQTSTTLKCEDDEPMSWWTSQSQYVHVKSFDNTEDPARPFGTSLHLIEVTADY 112
            ::||.....:|:..::..|.|....|: .|...||....::..|.:.   .|.:.|.|..||...
  Rat    33 VITPPGPEFVLNISSTFVLTCSSSAPV-MWEQMSQVPWQEAAMNQDG---TFSSVLTLTNVTGGD 93

  Fly   113 VAAYYCVKTSKFSQIAKEEQSDEAMIELVNQGYASSIYVYVNDPDTKL--VDSHNV-VTARQYTD 174
            ...|:||..:.......|.:               .||::|.||....  :||.:: :.....|:
  Rat    94 TGEYFCVYNNSLGPELSERK---------------RIYIFVPDPTMGFLPMDSEDLFIFVTDVTE 143

  Fly   175 VVIPCKPAMPDTEVLLETSNGE--MHSSKSVGRYDPQRGF--TIEIRSIVDGGDYYCRPNPPFPH 235
            ..|||:...|..||.|.....:  :|..     ||.||||  |.|.::      |.|:       
  Rat   144 TTIPCRVTDPQLEVTLHEKKVDIPLHVP-----YDHQRGFIGTFEDKT------YICK------- 190

  Fly   236 NEEEMTSIEVRFIATGLDIPRTQTTNMVYTYAPGVTDGDDEVLTVTNQSTGNLALIRGGDGTLSR 300
                 |:|..|.:          .::..|.|:..|:..:..|..|.       .::|.|:     
  Rat   191 -----TTIGDREV----------DSDTYYVYSLQVSSINVSVNAVQ-------TVVRQGE----- 228

  Fly   301 ERARRSPARLAPMNASPSPRPGQDGKPLPKPVIRSSVEHHVFTDTNFTLDCEQSAYVESVYGMEW 365
                                                         :.|:.|  ......|...:|
  Rat   229 ---------------------------------------------SITIRC--IVMGNDVVNFQW 246

  Fly   366 FTPSRDENR--------IFASQSRTDPKTRNSTHQTGRSTLTVLNAQPSDTGLYKCVTTDNSNQN 422
            ..|.....|        :|...||..            |.|.:..|:.||:|.|.|..:.:.|.:
  Rat   247 TYPRMKSGRLVEPVTDYLFGVPSRIG------------SILHIPTAELSDSGTYTCNVSVSVNDH 299

  Fly   423 VQRATYRIKVLKQNESYLNVGEPSGHYNVQE-YANRTIQMTANFEGFPTPSFSWFKPDGT----- 481
            .......:.|::  ..|:.:.|......:.| :.:||:|:.  ||.:||||..|||.:.|     
  Rat   300 GDEKAINVTVIE--NGYVRLLETLEDVQIAELHRSRTLQVV--FEAYPTPSVLWFKDNRTLGDSS 360

  Fly   482 --EVRQSENNFKILSTELSTMLQVLNAQLQDSGTYVLRGSNSFGVVQREYNVSV-MDAPALKMSD 543
              |:..|..|  :..|...:.|.::..::.::|.|.:|..::...||..:.:.| :....|::|:
  Rat   361 AGELVLSTRN--VSETRYVSELTLVRVKVSEAGYYTMRAFHADDQVQLSFKLQVNVPVRVLELSE 423

  Fly   544 AYVQVGSVARLECTVRSYPPAIVTFFFRPCSLEPQWPTCSVLNQNFSLPSEQEKYQFQTRPRPGK 608
            ::...|... |.|..|..|...||           |.||..|.:                 .|.|
  Rat   424 SHPANGEQI-LRCRGRGMPQPNVT-----------WSTCRDLKR-----------------CPRK 459

  Fly   609 LSVERIYEVSFLPTEPGILTCIAQNIIDGKERRTLTKAHVLLGNISENMTIYGFDKDHKIAKEDN 673
            ||          ||.                          |||.|:          .:...|.|
  Rat   460 LS----------PTP--------------------------LGNSSK----------EESQLETN 478

  Fly   674 VNFTCEALAYHFDGNLKWFINGEDLKESDSVHIETSHTKYSYKSTVHITTISDRDRGTYECRAYH 738
            |.|              |        |.|.                                   
  Rat   479 VTF--------------W--------EEDQ----------------------------------- 486

  Fly   739 NDKDAVYSSREIDLYVHDPSAPQWTNGGQEGHSKIKRKLSQTLELECASTAVPVAIVRWFKDDKE 803
                                                       |.|..||.              
  Rat   487 -------------------------------------------EYEVVSTL-------------- 494

  Fly   804 VTESKLRHIIEKESKLLITHLYPGDEGVYKCVVENRLDRIERSFTVVISDLPGISMAWVWFGVIL 868
                :|||:.:..|              .:|:::|.:.|..:..|||...||        |.|::
  Rat   495 ----RLRHVDQPLS--------------VRCMLQNSMGRDSQEVTVVPHSLP--------FKVVV 533

  Fly   869 FLILIGLCV-------FLAVRYQKEHKRHLALKAAGLANFEEGAVGHINPDLTLDEQAELLPYNR 926
            ...::.|.|       .|.:.:|::.:..:..|.....:.:.....:::|        ..|||:.
  Rat   534 ISAILALVVLTVISLIILIMLWQRKPRYEIRWKVIESVSSDGHEYIYVDP--------VQLPYDS 590

  Fly   927 EFEFPRENLKLGKQLGAGAFGVVLKGEAKGIRREEPTTTVAVKMVKATADNEVVRALVSELKIMV 991
            .:|.||:.|.||:.||:||||.|::..|.|:...:.|..|||||:|:||.:...:||:||||||.
  Rat   591 TWELPRDQLVLGRTLGSGAFGQVVEATAHGLSHSQATMKVAVKMLKSTARSSEKQALMSELKIMS 655

  Fly   992 HLGQHLNVVNLLGAVTKNIAKRELMVIVEYCRFGNIQNFLLRNRKCFINQINPDTDHIDPSIMTQ 1056
            |||.||||||||||.||.   ..:.:|.||||:|::.::|.||:..|:.:  ....|..||.   
  Rat   656 HLGPHLNVVNLLGACTKG---GPIYIITEYCRYGDLVDYLHRNKHTFLQR--HSNKHCPPST--- 712

  Fly  1057 RMSDNYELHRDTNGGGLKYAN---VGFPIHSYINEPHNNNTQPPTHRRNSDNDPRSGTRAGRTGS 1118
                  ||          |:|   ||..:.|::|                        ..|.:..
  Rat   713 ------EL----------YSNALPVGLSLPSHLN------------------------LTGESDG 737

  Fly  1119 GTATYSYDRQMDTCATVMTTVP-------------EDDQIMS--NNSVQPAWRSNYK-TDSTEAM 1167
            |....|.|..:|       .||             |....|:  :|.|..|....|: |...::.
  Rat   738 GYMDMSKDESVD-------YVPMLDMKGHIKYADIESSSYMAPYDNYVPSAPERTYRATLINDSP 795

  Fly  1168 TVTTVDLISWAFQVARGMDYLSSKKVLHGDLAARNILLCEDNVVKICDFGLARSMYRGDNYKKSE 1232
            .::..||:.:::|||.||::|:||..:|.||||||:|:||..:||||||||||.:.|..||....
  Rat   796 VLSYTDLVGFSYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKG 860

  Fly  1233 NGKLPIKWLALESLSDHVFSTYSDVWSYGIVLWEMFSLAKVPYPGIDPNQELFNKLNDGYRMEKP 1297
            :..||:||:|.||:.:.:::|.|||||:||:|||:|:|...|||.:..|.:.:|.:..||||.:|
  Rat   861 STFLPLKWMAPESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNDQFYNAIKRGYRMAQP 925

  Fly  1298 KFANQELYEIMLECWRKNPESRPLFAELEKRFANMLGEDVASHYLDLNNPYMQSNIEYMKKQSTD 1362
            ..|:.|:||||.:||.:..|:||.|::|......:|||.....|..::..:::|          |
  Rat   926 AHASDEIYEIMQKCWEEKFETRPPFSQLVLLLERLLGEGYKKKYQQVDEEFLRS----------D 980

  Fly  1363 YLALMGSPDEL----APAAPRYVNGHIVPDIRIEELPDDYMEMSRDSDPDACTAIFSPTRLEGE- 1422
            :.|::.|...|    :..:|...:..:...::..|..:||:....|..|||.    ....|||. 
  Rat   981 HPAILRSQARLPGLHSLRSPLDTSSVLYTAVQPNETDNDYIIPLPDPKPDAA----DEGLLEGSP 1041

  Fly  1423 ---SSDFPDFSSETTFNF---------PGARQSPTLSNNLNSGSSKPL 1458
               ||...:.::.:|.:.         |.|.....|....:||...||
  Rat  1042 SLASSTLNEVNTSSTISCDSPLELQEEPQAEPEAQLEQPQDSGCPGPL 1089

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG_like 346..432 CDD:214653 18/93 (19%)
Ig strand C 363..366 CDD:409353 0/2 (0%)
Ig strand E 396..400 CDD:409353 2/3 (67%)
Ig strand F 410..415 CDD:409353 2/4 (50%)
Ig strand G 425..428 CDD:409353 0/2 (0%)
Ig 458..533 CDD:472250 22/81 (27%)
Ig strand B 459..463 CDD:409353 1/3 (33%)
Ig strand C 472..476 CDD:409353 1/3 (33%)
Ig strand E 497..503 CDD:409353 1/5 (20%)
Ig strand F 513..518 CDD:409353 1/4 (25%)
Ig 671..>742 CDD:472250 7/70 (10%)
Ig strand B 674..678 CDD:409353 2/3 (67%)
Ig strand C 687..691 CDD:409353 0/3 (0%)
Ig strand E 717..721 CDD:409353 0/3 (0%)
Ig strand F 731..736 CDD:409353 0/4 (0%)
Ig 779..851 CDD:472250 13/71 (18%)
Ig strand B 781..785 CDD:409570 1/3 (33%)
Ig strand C 794..798 CDD:409570 0/3 (0%)
Ig strand E 816..821 CDD:409570 1/4 (25%)
Ig strand F 831..836 CDD:409570 1/4 (25%)
Ig strand G 844..847 CDD:409570 0/2 (0%)
Protein Kinases, catalytic domain 927..1332 CDD:473864 158/423 (37%)
PdgfrbNP_113713.1 ig 36..113 CDD:395002 18/80 (23%)
Ig strand B 49..53 CDD:409353 1/3 (33%)
Ig strand C 59..62 CDD:409353 0/3 (0%)
Ig strand E 82..86 CDD:409353 1/3 (33%)
Ig strand F 96..101 CDD:409353 2/4 (50%)
Ig 211..309 CDD:472250 22/168 (13%)
Ig strand B 230..234 CDD:409353 1/3 (33%)
Ig strand C 243..247 CDD:409353 0/3 (0%)
Ig strand E 273..277 CDD:409353 2/3 (67%)
Ig strand F 287..292 CDD:409353 2/4 (50%)
Ig strand G 302..305 CDD:409353 0/2 (0%)
Ig 313..414 CDD:472250 27/104 (26%)
Ig strand B 333..337 CDD:409353 2/3 (67%)
Ig strand C 346..350 CDD:409353 1/3 (33%)
Ig strand E 378..382 CDD:409353 1/3 (33%)
Ig strand F 392..397 CDD:409353 1/4 (25%)
Ig strand G 405..408 CDD:409353 1/2 (50%)
Protein Kinases, catalytic domain 561..952 CDD:473864 162/453 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1016..1097 19/78 (24%)

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