DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pvr and Pdgfrb

DIOPT Version :9

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:NP_113713.1 Gene:Pdgfrb / 24629 RGDID:3285 Length:1097 Species:Rattus norvegicus


Alignment Length:1478 Identity:346/1478 - (23%)
Similarity:548/1478 - (37%) Gaps:488/1478 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LMTPCKSAIILDAQTSTTLKCEDDEPMSWWTSQSQYVHVKSFDNTEDPARPFGTSLHLIEVTADY 112
            ::||.....:|:..::..|.|....|: .|...||....::..|.:.   .|.:.|.|..||...
  Rat    33 VITPPGPEFVLNISSTFVLTCSSSAPV-MWEQMSQVPWQEAAMNQDG---TFSSVLTLTNVTGGD 93

  Fly   113 VAAYYCVKTSKFSQIAKEEQSDEAMIELVNQGYASSIYVYVNDPDTKL--VDSHNV-VTARQYTD 174
            ...|:||..:.......|.:               .||::|.||....  :||.:: :.....|:
  Rat    94 TGEYFCVYNNSLGPELSERK---------------RIYIFVPDPTMGFLPMDSEDLFIFVTDVTE 143

  Fly   175 VVIPCKPAMPDTEVLLETSNGE--MHSSKSVGRYDPQRGF--TIEIRSIVDGGDYYCRPNPPFPH 235
            ..|||:...|..||.|.....:  :|..     ||.||||  |.|.::      |.|:       
  Rat   144 TTIPCRVTDPQLEVTLHEKKVDIPLHVP-----YDHQRGFIGTFEDKT------YICK------- 190

  Fly   236 NEEEMTSIEVRFIATGLDIPRTQTTNMVYTYAPGVTDGDDEVLTVTNQSTGNLALIRGGDGTLSR 300
                 |:|..|.:          .::..|.|:..|:..:..|..|.       .::|.|:     
  Rat   191 -----TTIGDREV----------DSDTYYVYSLQVSSINVSVNAVQ-------TVVRQGE----- 228

  Fly   301 ERARRSPARLAPMNASPSPRPGQDGKPLPKPVIRSSVEHHVFTDTNFTLDCEQSAYVESVYGMEW 365
                                                         :.|:.|  ......|...:|
  Rat   229 ---------------------------------------------SITIRC--IVMGNDVVNFQW 246

  Fly   366 FTPSRDENR--------IFASQSRTDPKTRNSTHQTGRSTLTVLNAQPSDTGLYKCVTTDNSNQN 422
            ..|.....|        :|...||..            |.|.:..|:.||:|.|.|..:.:.|.:
  Rat   247 TYPRMKSGRLVEPVTDYLFGVPSRIG------------SILHIPTAELSDSGTYTCNVSVSVNDH 299

  Fly   423 VQRATYRIKVLKQNESYLNVGEPSGHYNVQE-YANRTIQMTANFEGFPTPSFSWFKPDGT----- 481
            .......:.|::  ..|:.:.|......:.| :.:||:|:.  ||.:||||..|||.:.|     
  Rat   300 GDEKAINVTVIE--NGYVRLLETLEDVQIAELHRSRTLQVV--FEAYPTPSVLWFKDNRTLGDSS 360

  Fly   482 --EVRQSENNFKILSTELSTMLQVLNAQLQDSGTYVLRGSNSFGVVQREYNVSV-MDAPALKMSD 543
              |:..|..|  :..|...:.|.::..::.::|.|.:|..::...||..:.:.| :....|::|:
  Rat   361 AGELVLSTRN--VSETRYVSELTLVRVKVSEAGYYTMRAFHADDQVQLSFKLQVNVPVRVLELSE 423

  Fly   544 AYVQVGSVARLECTVRSYPPAIVTFFFRPCSLEPQWPTCSVLNQNFSLPSEQEKYQFQTRPRPGK 608
            ::...|... |.|..|..|...||           |.||..|.:                 .|.|
  Rat   424 SHPANGEQI-LRCRGRGMPQPNVT-----------WSTCRDLKR-----------------CPRK 459

  Fly   609 LSVERIYEVSFLPTEPGILTCIAQNIIDGKERRTLTKAHVLLGNISENMTIYGFDKDHKIAKEDN 673
            ||          ||.                          |||.|:          .:...|.|
  Rat   460 LS----------PTP--------------------------LGNSSK----------EESQLETN 478

  Fly   674 VNFTCEALAYHFDGNLKWFINGEDLKESDSVHIETSHTKYSYKSTVHITTISDRDRGTYECRAYH 738
            |.|              |        |.|.                                   
  Rat   479 VTF--------------W--------EEDQ----------------------------------- 486

  Fly   739 NDKDAVYSSREIDLYVHDPSAPQWTNGGQEGHSKIKRKLSQTLELECASTAVPVAIVRWFKDDKE 803
                                                       |.|..||.              
  Rat   487 -------------------------------------------EYEVVSTL-------------- 494

  Fly   804 VTESKLRHIIEKESKLLITHLYPGDEGVYKCVVENRLDRIERSFTVVISDLPGISMAWVWFGVIL 868
                :|||:.:..|              .:|:::|.:.|..:..|||...||        |.|::
  Rat   495 ----RLRHVDQPLS--------------VRCMLQNSMGRDSQEVTVVPHSLP--------FKVVV 533

  Fly   869 FLILIGLCV-------FLAVRYQKEHKRHLALKAAGLANFEEGAVGHINPDLTLDEQAELLPYNR 926
            ...::.|.|       .|.:.:|::.:..:..|.....:.:.....:::|        ..|||:.
  Rat   534 ISAILALVVLTVISLIILIMLWQRKPRYEIRWKVIESVSSDGHEYIYVDP--------VQLPYDS 590

  Fly   927 EFEFPRENLKLGKQLGAGAFGVVLKGEAKGIRREEPTTTVAVKMVKATADNEVVRALVSELKIMV 991
            .:|.||:.|.||:.||:||||.|::..|.|:...:.|..|||||:|:||.:...:||:||||||.
  Rat   591 TWELPRDQLVLGRTLGSGAFGQVVEATAHGLSHSQATMKVAVKMLKSTARSSEKQALMSELKIMS 655

  Fly   992 HLGQHLNVVNLLGAVTKNIAKRELMVIVEYCRFGNIQNFLLRNRKCFINQINPDTDHIDPSIMTQ 1056
            |||.||||||||||.||.   ..:.:|.||||:|::.::|.||:..|:.:  ....|..||.   
  Rat   656 HLGPHLNVVNLLGACTKG---GPIYIITEYCRYGDLVDYLHRNKHTFLQR--HSNKHCPPST--- 712

  Fly  1057 RMSDNYELHRDTNGGGLKYAN---VGFPIHSYINEPHNNNTQPPTHRRNSDNDPRSGTRAGRTGS 1118
                  ||          |:|   ||..:.|::|                        ..|.:..
  Rat   713 ------EL----------YSNALPVGLSLPSHLN------------------------LTGESDG 737

  Fly  1119 GTATYSYDRQMDTCATVMTTVP-------------EDDQIMS--NNSVQPAWRSNYK-TDSTEAM 1167
            |....|.|..:|       .||             |....|:  :|.|..|....|: |...::.
  Rat   738 GYMDMSKDESVD-------YVPMLDMKGHIKYADIESSSYMAPYDNYVPSAPERTYRATLINDSP 795

  Fly  1168 TVTTVDLISWAFQVARGMDYLSSKKVLHGDLAARNILLCEDNVVKICDFGLARSMYRGDNYKKSE 1232
            .::..||:.:::|||.||::|:||..:|.||||||:|:||..:||||||||||.:.|..||....
  Rat   796 VLSYTDLVGFSYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKG 860

  Fly  1233 NGKLPIKWLALESLSDHVFSTYSDVWSYGIVLWEMFSLAKVPYPGIDPNQELFNKLNDGYRMEKP 1297
            :..||:||:|.||:.:.:::|.|||||:||:|||:|:|...|||.:..|.:.:|.:..||||.:|
  Rat   861 STFLPLKWMAPESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNDQFYNAIKRGYRMAQP 925

  Fly  1298 KFANQELYEIMLECWRKNPESRPLFAELEKRFANMLGEDVASHYLDLNNPYMQSNIEYMKKQSTD 1362
            ..|:.|:||||.:||.:..|:||.|::|......:|||.....|..::..:::|          |
  Rat   926 AHASDEIYEIMQKCWEEKFETRPPFSQLVLLLERLLGEGYKKKYQQVDEEFLRS----------D 980

  Fly  1363 YLALMGSPDEL----APAAPRYVNGHIVPDIRIEELPDDYMEMSRDSDPDACTAIFSPTRLEGE- 1422
            :.|::.|...|    :..:|...:..:...::..|..:||:....|..|||.    ....|||. 
  Rat   981 HPAILRSQARLPGLHSLRSPLDTSSVLYTAVQPNETDNDYIIPLPDPKPDAA----DEGLLEGSP 1041

  Fly  1423 ---SSDFPDFSSETTFNF---------PGARQSPTLSNNLNSGSSKPL 1458
               ||...:.::.:|.:.         |.|.....|....:||...||
  Rat  1042 SLASSTLNEVNTSSTISCDSPLELQEEPQAEPEAQLEQPQDSGCPGPL 1089

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG 346..432 CDD:214652 18/93 (19%)
Ig <363..432 CDD:299845 15/76 (20%)
Ig 466..533 CDD:299845 19/73 (26%)
IG_like 672..754 CDD:214653 6/81 (7%)
Ig 674..739 CDD:143165 5/64 (8%)
IGc2 779..840 CDD:197706 10/60 (17%)
PKc_like 927..1332 CDD:304357 158/423 (37%)
Pkinase_Tyr 935..1329 CDD:285015 155/412 (38%)
PdgfrbNP_113713.1 ig 36..113 CDD:395002 18/80 (23%)
Ig strand B 49..53 CDD:409353 1/3 (33%)
Ig strand C 59..62 CDD:409353 0/3 (0%)
Ig strand E 82..86 CDD:409353 1/3 (33%)
Ig strand F 96..101 CDD:409353 2/4 (50%)
Ig 211..309 CDD:416386 22/168 (13%)
Ig strand A 211..215 CDD:409353 0/3 (0%)
Ig strand A' 222..226 CDD:409353 0/3 (0%)
Ig strand B 228..237 CDD:409353 2/60 (3%)
Ig strand C 242..247 CDD:409353 0/4 (0%)
Ig strand C' 250..252 CDD:409353 0/1 (0%)
Ig strand D 256..264 CDD:409353 0/7 (0%)
Ig strand E 270..277 CDD:409353 3/18 (17%)
Ig strand F 287..293 CDD:409353 2/5 (40%)
Ig strand G 298..304 CDD:409353 0/5 (0%)
Ig 313..414 CDD:416386 27/104 (26%)
PKc_like 561..952 CDD:419665 162/453 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1016..1097 19/78 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D126783at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_106773
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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