DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pvr and old-1

DIOPT Version :9

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:NP_496130.2 Gene:old-1 / 191737 WormBaseID:WBGene00003862 Length:502 Species:Caenorhabditis elegans


Alignment Length:552 Identity:142/552 - (25%)
Similarity:221/552 - (40%) Gaps:192/552 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   866 VILFLILIGLCVFLAVRYQK------------------EHKRH---------------------L 891
            |.|.:::.||.:|...|.::                  :|||.                     |
 Worm    68 VALAILICGLIIFYNSRKRELRANRSRGDEYLLEPTSADHKRRNSSNIVPPEPTPYPITSGESDL 132

  Fly   892 ALKAAGLANFEEGAVGHINPDLTL---DEQAELLPYNREFEFPRENLKL--GKQLGAGAFGVVLK 951
            ....:.|:|.|      ..|:|.|   :|:...|.|..|.|...|:|.:  |:.||:|.||::.|
 Worm   133 RQTPSRLSNVE------CPPELELAPINEKIMYLHYYAEVEINEEDLDISKGRPLGSGEFGIIRK 191

  Fly   952 G--EAKGIRREEPTT--TVAVKMVKATADNEVVRALV-SELKIMVHLGQHLNVVNLLGAVTKNIA 1011
            |  .:|..:.||..:  .||||: .....|::.:.|: .|||:|..:|:|.|::.|:|.:|....
 Worm   192 GFLRSKNSKNEEKESRLEVAVKL-PLNEYNQIQQELIYDELKVMCAVGKHPNILALVGGITFGER 255

  Fly  1012 KRELMVIVEYCRFGNIQNFLLRNRKCFINQINPDTDHIDPSIMTQRMSDNYELHRDTNGGGLKYA 1076
            |   |::.|:...|::.:||..||..|.|                                    
 Worm   256 K---MIVSEFVENGDLLSFLRDNRIYFTN------------------------------------ 281

  Fly  1077 NVGFPIHSYINEPHNNNTQPPTHRRNSDNDPRSGTRAGRTGSGTATYSYDRQMDTCATVMTTVPE 1141
                                                                             
 Worm   282 ----------------------------------------------------------------- 281

  Fly  1142 DDQIMSNNSVQPAWRSNYKTDSTEAMTVTTVDLISWAFQVARGMDYLSSKKVLHGDLAARNILLC 1206
             ||          |     |..||..:::.|||:|:|||:|:||:||.....:|.|||.||:|:.
 Worm   282 -DQ----------W-----TLETEQDSLSLVDLLSFAFQIAKGMEYLIHVPCVHRDLALRNVLIK 330

  Fly  1207 EDNVVKICDFGLARSMYRGDNYK-KSENGKLPIKWLALESLSDHVFSTYSDVWSYGIVLWEMFSL 1270
            ::.:::|.||||||.....|.|| :|.:..|||.|:|.||:...:|:..|||||||:.|:|:|||
 Worm   331 KNRIIRIADFGLARRHKNKDYYKTQSVDTPLPIHWMAPESIDKLLFTQKSDVWSYGVCLYELFSL 395

  Fly  1271 AKVPYPGIDPNQE-------LFNKLNDGYRMEKPKFANQELYEIMLECWRKNPESRPLFAELEKR 1328
            .|.||..:....:       :.:.||:|.|:.:|..|:.|:|.:|..||..:..||..|.:..:.
 Worm   396 GKSPYENVIKYDQRDFYWKYVLSYLNEGKRLAQPAHADAEIYNVMKLCWDLDMNSRTTFLDCIEF 460

  Fly  1329 FANMLGEDVASHYLDL--------NNPYMQSN 1352
            |...|......::|||        ||....||
 Worm   461 FEKELKTTSNEYFLDLTRKLRSETNNQLRLSN 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG 346..432 CDD:214652
Ig <363..432 CDD:299845
Ig 466..533 CDD:299845
IG_like 672..754 CDD:214653
Ig 674..739 CDD:143165
IGc2 779..840 CDD:197706
PKc_like 927..1332 CDD:304357 115/419 (27%)
Pkinase_Tyr 935..1329 CDD:285015 111/408 (27%)
old-1NP_496130.2 TyrKc 175..461 CDD:197581 110/406 (27%)
PTKc 179..462 CDD:270623 109/403 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0200
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D126783at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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