DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pvr and Ntrk3

DIOPT Version :10

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:XP_036008659.1 Gene:Ntrk3 / 18213 MGIID:97385 Length:850 Species:Mus musculus


Alignment Length:1058 Identity:223/1058 - (21%)
Similarity:369/1058 - (34%) Gaps:368/1058 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   377 ASQSRTDPKTRN--STHQTGRSTLTVLNAQPSD--TGLYKCVTTDNSNQNVQ-RATYRIKVLKQN 436
            ||.:.|| .:||  |.|......|..|||...:  |||.|....::..:|:| ||..:...|:  
Mouse    69 ASINITD-ISRNITSIHIENWRGLHTLNAVDMELYTGLQKLTIKNSGLRNIQPRAFAKNPHLR-- 130

  Fly   437 ESYLNVGEPSGHYNVQEYANRTIQMTANFEGFPTPSFSWFKPDGTEVRQSENNFKILSTELSTM- 500
              |:|:.           :||.  .|.:::.|.|.|.       .|:| .|.||...|.::..| 
Mouse   131 --YINLS-----------SNRL--TTLSWQLFQTLSL-------RELR-LEQNFFNCSCDIRWMQ 172

  Fly   501 --LQVLNAQLQDSGTYVLRGSNSFGVVQREYNVSVMDAPALKMSDAYVQVGSVARLECTVRSYPP 563
              .:...|:|.....|.:....|...:.| .|:|..|.|.:          ||:.:..|||....
Mouse   173 LWQEQGEARLDSQSLYCISADGSQLPLFR-MNISQCDLPEI----------SVSHVNLTVREGDN 226

  Fly   564 AIVTFFFRPCS------LEPQWPTCSVLNQNFSLPSEQEKYQFQTRPRPGKLSVERIYEVSFLPT 622
            |::|     |:      .:..|....:.:.|          ..||......:....:..|:....
Mouse   227 AVIT-----CNGSGSPLPDVDWIVTGLQSIN----------THQTNLNWTNVHAINLTLVNVTSE 276

  Fly   623 EPGI-LTCIAQNIIDGKERRTLTKAHVLLGNISENMTIYGFDK-----DHKIAKEDNVNFTCEAL 681
            :.|. |||||:|::.             :.|.|..:|:|...:     :.::..|..:.|...  
Mouse   277 DNGFTLTCIAENVVG-------------MSNASVALTVYYPPRVVSLVEPEVRLEHCIEFVVR-- 326

  Fly   682 AYHFDGN----LKWFINGEDLKESDSVHI------ETSHTKYSYKSTVHITTISDRDRGTYECRA 736
                 ||    |.|..||:.|:||..:|:      |.|.....:....|.      :.|.|...|
Mouse   327 -----GNPTPTLHWLYNGQPLRESKIIHMDYYQEGEVSEGCLLFNKPTHY------NNGNYTLIA 380

  Fly   737 YHNDKDAVYSSREIDLYVHDPSAPQWTNGGQEGHSKIKRKLSQTLE-LECASTAVPVAIVRWFKD 800
                |:|:            .:|.|..|    ||. :|....::.: .:..|.|.|.        
Mouse   381 ----KNAL------------GTANQTIN----GHF-LKEPFPESTDFFDFESDASPT-------- 416

  Fly   801 DKEVTESKLRHIIEKESKLLITHLYPGDEGVYKCVVENRLDRIERSFTVVISDLPGISMAWVWFG 865
                            ..:.:|| .|.:                        |..|:|:|   .|
Mouse   417 ----------------PPITVTH-KPEE------------------------DTFGVSIA---VG 437

  Fly   866 VILFLILIGLCVFLAV-RYQKEHKRHLALKAAGLANFEEGA--VGHINPDLTLDEQAELLP---- 923
            :..|..::.:.:|:.: :|.:..|..:....|.::..|:.|  :.|||..:|.....:..|    
Mouse   438 LAAFACVLLVVLFIMINKYGRRSKFGMKGPVAVISGEEDSASPLHHINHGITTPSSLDAGPDTVV 502

  Fly   924 -------------YNRE-----------FEFPRENLKLGKQLGAGAFGVVLKGEAKGIRREEPTT 964
                         |.|:           ....|.::.|.::||.||||.|...|...:...:...
Mouse   503 IGMTRIPVIENPQYFRQGHNCHKPDTYVQHIKRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKM 567

  Fly   965 TVAVKMVK---ATADNEVVRALVSELKIMVHLGQHLNVVNLLGAVTKNIAKRELMVIVEYCRFGN 1026
            .||||.:|   ..|..:..|    |.:::.:| ||.::|...|.....   ..|:::.||.:.|:
Mouse   568 LVAVKALKDPTLAARKDFQR----EAELLTNL-QHEHIVKFYGVCGDG---DPLIMVFEYMKHGD 624

  Fly  1027 IQNFLLRNRKCFINQINPDTDHIDPSIMTQRMSDNYELHRDTNGGGLKYANVGFPIHSYINEPHN 1091
            :..||..:        .||.     .|:.                                    
Mouse   625 LNKFLRAH--------GPDA-----MILV------------------------------------ 640

  Fly  1092 NNTQPPTHRRNSDNDPRSGTRAGRTGSGTATYSYDRQMDTCATVMTTVPEDDQIMSNNSVQPAWR 1156
                        |..||..  .|..|..                                     
Mouse   641 ------------DGQPRQA--KGELGLS------------------------------------- 654

  Fly  1157 SNYKTDSTEAMTVTTVDLISWAFQVARGMDYLSSKKVLHGDLAARNILLCEDNVVKICDFGLARS 1221
                            .::..|.|:|.||.||:|:..:|.|||.||.|:..:.:|||.|||::|.
Mouse   655 ----------------QMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRD 703

  Fly  1222 MYRGDNYKKSENGK-------------------------LPIKWLALESLSDHVFSTYSDVWSYG 1261
            :|..|.|::....|                         |||:|:..||:....|:|.|||||:|
Mouse   704 VYSTDYYREGPCQKGPFNVSWQQQRLAASAASTVGGHTMLPIRWMPPESIMYRKFTTESDVWSFG 768

  Fly  1262 IVLWEMFSLAKVPYPGIDPNQELFNKLNDGYRMEKPKFANQELYEIMLECWRKNPESRPLFAELE 1326
            ::|||:|:..|.|:..:. |.|:...:..|..:|:|:...:|:|::||.||::.|:.|....|:.
Mouse   769 VILWEIFTYGKQPWFQLS-NTEVIECITQGRVLERPRVCPKEVYDVMLGCWQREPQQRLNIKEIY 832

  Fly  1327 KRFANMLGEDVASHYLDL 1344
            | ..:.||: ....|||:
Mouse   833 K-ILHALGK-ATPIYLDI 848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG_like 346..432 CDD:214653 20/59 (34%)
Ig strand C 363..366 CDD:409353
Ig strand E 396..400 CDD:409353 1/3 (33%)
Ig strand F 410..415 CDD:409353 2/4 (50%)
Ig strand G 425..428 CDD:409353 2/2 (100%)
Ig 458..533 CDD:472250 17/77 (22%)
Ig strand B 459..463 CDD:409353 0/3 (0%)
Ig strand C 472..476 CDD:409353 1/3 (33%)
Ig strand E 497..503 CDD:409353 1/8 (13%)
Ig strand F 513..518 CDD:409353 1/4 (25%)
Ig 671..>742 CDD:472250 18/80 (23%)
Ig strand B 674..678 CDD:409353 1/3 (33%)
Ig strand C 687..691 CDD:409353 3/7 (43%)
Ig strand E 717..721 CDD:409353 0/3 (0%)
Ig strand F 731..736 CDD:409353 1/4 (25%)
Ig 779..851 CDD:472250 6/72 (8%)
Ig strand B 781..785 CDD:409570 0/4 (0%)
Ig strand C 794..798 CDD:409570 0/3 (0%)
Ig strand E 816..821 CDD:409570 0/4 (0%)
Ig strand F 831..836 CDD:409570 0/4 (0%)
Ig strand G 844..847 CDD:409570 0/2 (0%)
Protein Kinases, catalytic domain 927..1332 CDD:473864 98/443 (22%)
Ntrk3XP_036008659.1 LRR_8 103..160 CDD:404697 20/81 (25%)
leucine-rich repeat 105..128 CDD:275378 6/22 (27%)
leucine-rich repeat 129..151 CDD:275378 8/38 (21%)
leucine-rich repeat 152..164 CDD:275378 5/19 (26%)
LRRCT_2 163..208 CDD:465313 9/45 (20%)
ig 214..299 CDD:395002 21/112 (19%)
Ig strand B 227..231 CDD:409353 2/8 (25%)
Ig strand C 240..244 CDD:409353 0/3 (0%)
Ig strand E 266..270 CDD:409353 0/3 (0%)
Ig strand F 281..286 CDD:409353 3/4 (75%)
Ig strand G 294..297 CDD:409353 1/2 (50%)
IgI_TrKABC_d5 304..396 CDD:409360 25/125 (20%)
Ig strand A 305..311 CDD:409360 0/5 (0%)
Ig strand A' 313..316 CDD:409360 0/2 (0%)
Ig strand B 319..327 CDD:409360 1/14 (7%)
Ig strand C 330..337 CDD:409360 2/6 (33%)
Ig strand C' 340..343 CDD:409360 0/2 (0%)
Ig strand D 348..354 CDD:409360 1/5 (20%)
Ig strand E 358..366 CDD:409360 1/7 (14%)
Ig strand F 374..382 CDD:409360 3/11 (27%)
Ig strand G 385..393 CDD:409360 3/11 (27%)
PTKc_TrkC 532..843 CDD:270676 100/437 (23%)
Blue background indicates that the domain is not in the aligned region.

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