DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pvr and ddr-2

DIOPT Version :9

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:NP_508572.1 Gene:ddr-2 / 180622 WormBaseID:WBGene00017381 Length:797 Species:Caenorhabditis elegans


Alignment Length:702 Identity:149/702 - (21%)
Similarity:256/702 - (36%) Gaps:200/702 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   686 DGNLKWFINGEDLKESDSVHIETSH----TKYSYKSTVHITTISDRDRGTYECRAYHNDKDAVYS 746
            :||:|......:|:....:.|.||:    :..::.|...:.:|:.:|                :|
 Worm   250 NGNVKLAFEFSELRNISGILIHTSNEFKKSAKAFSSATVLFSINGKD----------------FS 298

  Fly   747 SREIDLYVHDPSAPQWTNGGQEGHSKIKRKLSQTLELECASTAVPVAIVR--------WFKDDKE 803
                |..||       .|..::..|::.|    .:.:...:....||.:|        |....:.
 Worm   299 ----DTIVH-------FNNPEDTESEVPR----WIRIPVNNRIAKVAKIRLNFGTDSDWLFISEV 348

  Fly   804 VTESKLRHIIEKESKLLITHLYPGDEGVYKCVVENRLDRIERSFTVVISDLPGISMAWVWFGVIL 868
            ..||...:|     :||...:...|...|..|.|:.               .|.||  ..|.:..
 Worm   349 NFESNHTNI-----ELLNDDVVIPDSVSYFSVTEHD---------------DGTSM--FAFIIFF 391

  Fly   869 FLILIGLCVFLAVRYQKEHKRHLALKAAG---------LANFEEGAV-GHINPDL---------- 913
            |:.||...:.|.|.|:   ||...:||:.         |...:...: .|::|..          
 Worm   392 FMFLIVAVIILTVLYR---KREYRVKASSPSPNAKREILLTIDGNTIKHHVSPSTYQMARDNLQN 453

  Fly   914 TLDEQAELLPYNREFEFPRENLKLGKQLGAGA---FGVVLKGEAKGIRREEPTTTVAVKMVKATA 975
            .|.|:..:.|...::..|  ::.:...:.|..   :|:  .|.....:|..|.::    |||.:.
 Worm   454 ALIEKMPMSPIISDYAEP--DISVCSDVTANTPLLYGI--DGPYDTQKRSNPLSS----MVKYSD 510

  Fly   976 DNEVVRALVSELKIMVHLGQHLNVVNLLGAVTKNIAKRELMVI--VEYCRFGNIQNFLLRNRKCF 1038
            ..||....:.|                       ||:.:|:.:  :....||.:....|.|||..
 Worm   511 YGEVYCTTLPE-----------------------IARDKLICVSRIGQGEFGEVDLCQLENRKVA 552

  Fly  1039 INQINPDTDHIDPSIMTQRMSDNYELHRDTNG-GGLKYANVGFPIHSYINEPHNNNTQPPTHRRN 1102
            :.:::..:           .:|.:..||:... |.||:.||                        
 Worm   553 VKKLHGIS-----------QADEFSFHREIRVLGSLKHPNV------------------------ 582

  Fly  1103 SDNDPRSGTRAGRTGSGTATYSYDRQMDTCATVMTTVPEDDQIMSNNSVQPAWRSNYKTDSTEAM 1167
                                   ...:..| |:...:....:.|.|..:        |:...:..
 Worm   583 -----------------------VEVVGVC-TIQKPILCIMEYMENGDL--------KSYILKNP 615

  Fly  1168 TVTTVDLISWAFQVARGMDYLSSKKVLHGDLAARNILLCEDNVVKICDFGLARSMYRGDNYKKSE 1232
            |:.|...||...|:|.|:.||.|...:|.|:||||.|:..:..|||.|||:|||:|..:.||...
 Worm   616 TIQTSQCISICTQLAAGLAYLESCNFVHRDIAARNCLVDGEGNVKIADFGMARSLYSQEYYKVEG 680

  Fly  1233 NGKLPIKWLALESLSDHVFSTYSDVWSYGIVLWEMFSL-AKVPYPGI---DPNQELFNKLNDG-- 1291
            ...|||:|:|.|:|....|||.||||.:|:.:||:||| ::.||..:   |..:.|.:..:.|  
 Worm   681 KFVLPIRWMAWEALLLGKFSTASDVWGFGVTMWEIFSLCSEKPYSDMTDDDVVENLQSMSSTGSL 745

  Fly  1292 -YRMEKPKFANQELY-EIMLECWRKNPESRPLFAELEKRFANMLGEDVASHY 1341
             ..:.:|:....:|| |.:|.||......||.|..:.....:::......|:
 Worm   746 KQVLSRPRMCPSKLYNEQILPCWNYESSRRPSFENVHLHLQSLVHTSPHIHF 797

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG 346..432 CDD:214652
Ig <363..432 CDD:299845
Ig 466..533 CDD:299845
IG_like 672..754 CDD:214653 12/71 (17%)
Ig 674..739 CDD:143165 10/56 (18%)
IGc2 779..840 CDD:197706 13/68 (19%)
PKc_like 927..1332 CDD:304357 98/418 (23%)
Pkinase_Tyr 935..1329 CDD:285015 97/407 (24%)
ddr-2NP_508572.1 FA58C 24..181 CDD:214572
FA58C 29..180 CDD:238014
PKc_like 521..787 CDD:304357 87/355 (25%)
TyrKc 527..785 CDD:197581 84/324 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24416
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.