DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pvr and kin-16

DIOPT Version :9

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:NP_496017.1 Gene:kin-16 / 174499 WormBaseID:WBGene00002200 Length:495 Species:Caenorhabditis elegans


Alignment Length:530 Identity:140/530 - (26%)
Similarity:238/530 - (44%) Gaps:137/530 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   862 VWFGVILFLILIGLCVFLAVRYQK----EHKRHLA-------LKAAGLANFEEGAVGHINPDLTL 915
            |:|.|...|:|:....||..|.::    |.::::|       |:..|.|..||      ..:..|
 Worm    62 VFFVVYGLLVLLAFIAFLVWRLRRSKTQEKRKNMALMNIYSDLRDTGDAMPEE------LKNRPL 120

  Fly   916 DEQAELLPYNREFEFPRENLKLGKQLGAGAFGVVLKG-----EAKGIRREEPTTTVAVKMVKATA 975
            :::.:.|||.:::|...|||:....||:|.||||.||     ..|....::...|||||......
 Worm   121 NDKLDYLPYKKQYEIASENLENKSILGSGNFGVVRKGILKMASPKNEEEKKMRLTVAVKSAANCY 185

  Fly   976 DNEVVRALVSELKIMVHLGQHLNVVNLLGAVTKNIAKRELMVIVEYCRFGNIQNFLLRNRKCFIN 1040
            |......|.:||::|..:|:..||:.|:||||..:.|..|:::.||...|:|:.:|:.:|..|  
 Worm   186 DISQTSMLAAELRLMCSIGRFPNVLALVGAVTSELRKGRLLIVTEYIDCGDIRKYLIDHRNVF-- 248

  Fly  1041 QINPDTDHIDPSIMTQRMSDNYELHRDTNGGGLKYANVGFPIHSYINEPHNNNTQPPTHRRNSDN 1105
                 .||:        :.|.                         .||.:..|.....|:|   
 Worm   249 -----QDHL--------IEDK-------------------------TEPDSYLTPISAKRKN--- 272

  Fly  1106 DPRSGTRAGRTGSGTATYSYDRQMDTCATVMTTVPEDDQIMSNNSVQPAWRSNYKTDSTEAMTVT 1170
                                        .|.....|:...:...|:.               ::|
 Worm   273 ----------------------------YVFKNTDENSDYVIKESLD---------------SLT 294

  Fly  1171 TVDLISWAFQVARGMDYLSSKKVLHGDLAARNILLCEDNVVKICDFGLARSMYRGDNY--KKSEN 1233
            |.||:|:..|:|.||.||:|..::|.|||.||:||.::..::|.|||:||:......|  :|:::
 Worm   295 TSDLLSFGLQIANGMQYLASIPMVHRDLALRNVLLKKNKTIRIADFGMARTHENKSYYIPQKTKD 359

  Fly  1234 GKLPIKWLALESLSDHVFSTYSDVWSYGIVLWEMFSLAKVPYPGIDPNQELFNKLNDGYRMEKPK 1298
            ..:|::|::.|:.....|:..|||||:||.|:|:|:|.::|||.: |::.::..::.|.|..:|:
 Worm   360 APVPVRWMSPEAFDTMKFTEKSDVWSFGICLYEIFTLGQLPYPDV-PSERIYEYMHSGRRCPQPQ 423

  Fly  1299 FANQELYEIMLECWRKNPESRPLFAELEKRFANMLGEDVASHYLDLNNPYMQSNIEYMKKQSTDY 1363
            ..:.|||::|..||.:.||.||.|:...:.|                       |.:|||.::  
 Worm   424 HCHVELYDLMKLCWHEKPELRPNFSNCVEYF-----------------------IGHMKKSAS-- 463

  Fly  1364 LALMGSPDEL 1373
             .|:.:.||:
 Worm   464 -KLLENVDEM 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG 346..432 CDD:214652
Ig <363..432 CDD:299845
Ig 466..533 CDD:299845
IG_like 672..754 CDD:214653
Ig 674..739 CDD:143165
IGc2 779..840 CDD:197706
PKc_like 927..1332 CDD:304357 114/411 (28%)
Pkinase_Tyr 935..1329 CDD:285015 110/400 (28%)
kin-16NP_496017.1 STYKc 140..454 CDD:214568 110/400 (28%)
PTKc 145..454 CDD:270623 109/395 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0200
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D126783at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR24416
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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