DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pvr and Fgfr4

DIOPT Version :9

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:XP_006517162.3 Gene:Fgfr4 / 14186 MGIID:95525 Length:829 Species:Mus musculus


Alignment Length:944 Identity:245/944 - (25%)
Similarity:364/944 - (38%) Gaps:341/944 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   607 GKLSVERIYEVSFLPTEPGILTCIAQNIIDGKERRTLTKAHVLLGNISENMTIYGFDKD------ 665
            |:|.:     .||||.:.|...|:|        |.::|..|.|...:.:::|....|:|      
Mouse   111 GRLEI-----ASFLPEDAGRYLCLA--------RGSMTVVHNLTLLMDDSLTSISNDEDPKTLSS 162

  Fly   666 ------------------------HKIAKEDNVNFTCEALAYHFDGN----LKWFINGEDLKESD 702
                                    |.:...:.|.|.|.|.     ||    :.|      ||:..
Mouse   163 SSSGHVYPQQAPYWTHPQRMEKKLHAVPAGNTVKFRCPAA-----GNPMPTIHW------LKDGQ 216

  Fly   703 SVH-------IETSHTKYSYKSTVHITTISDRDRGTYECRAYHNDKDAVYSSREIDLYVHDPSAP 760
            :.|       |...|..:|    :.:.::...|||||.| ...|...::..|..:|:....|..|
Mouse   217 AFHGENRIGGIRLRHQHWS----LVMESVVPSDRGTYTC-LVENSLGSIRYSYLLDVLERSPHRP 276

  Fly   761 QWTNGGQEGHSKIKRKLSQTLELECA--STAVPVAIVRWFKDDKEVTESKLRHIIEKESK----- 818
            ....|.....:.:   :...:||.|.  |.|.|  .::|           |:|::...|.     
Mouse   277 ILQAGLPANTTAV---VGSDVELLCKVYSDAQP--HIQW-----------LKHVVINGSSFGADG 325

  Fly   819 -------------------LLITHLYPGDEGVYKCVVENRLDRIERSFTVVISDLPGISMAWV-- 862
                               |.:.::...|.|.|.|:..|.:....:|..:.:  ||...:.|.  
Mouse   326 FPYVQVLKTTDINSSEVEVLYLRNVSAEDAGEYTCLAGNSIGLSYQSAWLTV--LPEEDLTWTTA 388

  Fly   863 -----WFGVILF----LILIGLCVFLAVRYQKEHKRH---------------------LALKAAG 897
                 :..:||:    |:|:.|.:...|.:::..:.|                     |..:::|
Mouse   389 TPEARYTDIILYVSGSLVLLVLLLLAGVYHRQVIRGHYSRQPVTIQKLSRFPLARQFSLESRSSG 453

  Fly   898 LANFE--EGA----------VGHINPDLTLDEQAELLPYNREFEFPRENLKLGKQLGAGAFGVVL 950
            .::..  .|.          .|.:|.||.||..         :||||:.|.|||.||.|.||.|:
Mouse   454 KSSLSLVRGVRLSSSGPPLLTGLVNLDLPLDPL---------WEFPRDRLVLGKPLGEGCFGQVV 509

  Fly   951 KGEAKGI--RREEPTTTVAVKMVKATADNEVVRALVSELKIMVHLGQHLNVVNLLGAVTKNIAKR 1013
            :.||.|:  .|.:.|:||||||:|..|.::.:..||||:::|..:|:|.|::||||..|:   :.
Mouse   510 RAEAFGMDPSRPDQTSTVAVKMLKDNASDKDLADLVSEMEVMKLIGRHKNIINLLGVCTQ---EG 571

  Fly  1014 ELMVIVEYCRFGNIQNFLLRNRKCFINQINPDTDHIDPSIMTQRMSDNYELHRDTNGGGLKYANV 1078
            .|.||||....||::.||...|                                           
Mouse   572 PLYVIVECAAKGNLREFLRARR------------------------------------------- 593

  Fly  1079 GFPIHSYINEPHNNNTQPPTHRRNSDNDPRSGTRAGRTGSGTATYSYDRQMDTCATVMTTVPEDD 1143
                             ||....:.|. |||       ..|..::                    
Mouse   594 -----------------PPGPDLSPDG-PRS-------SEGPLSF-------------------- 613

  Fly  1144 QIMSNNSVQPAWRSNYKTDSTEAMTVTTVDLISWAFQVARGMDYLSSKKVLHGDLAARNILLCED 1208
                     ||                   |:|.|:||||||.||.|:|.:|.||||||:|:.||
Mouse   614 ---------PA-------------------LVSCAYQVARGMQYLESRKCIHRDLAARNVLVTED 650

  Fly  1209 NVVKICDFGLARSMYRGDNYKKSENGKLPIKWLALESLSDHVFSTYSDVWSYGIVLWEMFSLAKV 1273
            :|:||.||||||.::..|.|||:.||:||:||:|.|:|.|.|::..|||||:||:|||:|:|...
Mouse   651 DVMKIADFGLARGVHHIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILLWEIFTLGGS 715

  Fly  1274 PYPGIDPNQELFNKLNDGYRMEKPKFANQELYEIMLECWRKNPESRPLFAELEKRFANMLGEDVA 1338
            ||||| |.:|||:.|.:|:|||:|.....|||.:|.|||...|..||.|.:|.:....:| ..|:
Mouse   716 PYPGI-PVEELFSLLREGHRMERPPNCPSELYGLMRECWHAAPSQRPTFKQLVEALDKVL-LAVS 778

  Fly  1339 SHYLDLN---NPYMQSNIEYMKKQSTDYLALMGSPDELAPAAPRYVNGHIVPDIRIEELPDDYME 1400
            ..||||.   .|:..||                                           .|...
Mouse   779 EEYLDLRLTFGPFSPSN-------------------------------------------GDASS 800

  Fly  1401 MSRDSDPDACTAIFSPTRLEGESSDFPDFSSETT 1434
            ....||     ::||...|..|.|.||...|:||
Mouse   801 TCSSSD-----SVFSHDPLPLEPSPFPFSDSQTT 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG 346..432 CDD:214652
Ig <363..432 CDD:299845
Ig 466..533 CDD:299845
IG_like 672..754 CDD:214653 22/92 (24%)
Ig 674..739 CDD:143165 19/75 (25%)
IGc2 779..840 CDD:197706 16/86 (19%)
PKc_like 927..1332 CDD:304357 145/406 (36%)
Pkinase_Tyr 935..1329 CDD:285015 141/395 (36%)
Fgfr4XP_006517162.3 IGc2 77..134 CDD:197706 10/35 (29%)
Ig 184..268 CDD:386229 22/99 (22%)
Ig3_FGFR-2 291..378 CDD:143266 17/101 (17%)
PTKc_FGFR4 481..794 CDD:133230 155/442 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0200
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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