DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pvr and Dscam

DIOPT Version :9

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:XP_006522949.1 Gene:Dscam / 13508 MGIID:1196281 Length:2034 Species:Mus musculus


Alignment Length:1395 Identity:254/1395 - (18%)
Similarity:427/1395 - (30%) Gaps:467/1395 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 SAIILDAQTSTTLKCEDDEPMSWWTSQSQYVHVKSFDNTEDPARPFGTSLHLIEVTADYVAAYYC 118
            |.:|.|    .|..|..:.|..  ..:||.||:|:.     ...|:...:...:.....||.:.|
Mouse    92 STLIHD----NTYYCTAENPSG--KIRSQDVHIKAV-----LREPYTVRVEDQKTMRGNVAVFKC 145

  Fly   119 VKTSKFSQIAKEEQSDEAMIELVNQG---YASSIYVYVNDPDTKLVD---SHNVVTARQYTDVVI 177
            :..|...........::..:.||:..   ..|:..:|:.|...:  |   ::..:|..:||    
Mouse   146 IIPSSVEAYVTVVSWEKDTVSLVSGSRFLITSTGALYIKDVQNE--DGLYNYRCITRHRYT---- 204

  Fly   178 PCKPAMPDTEVLLETSNGEMHSSKSVGRY--DPQRGFTIEIRSIVDGGDYY-----------CR- 228
                             ||...|.|...:  ||..    ...||:||.|:.           |: 
Mouse   205 -----------------GETRQSNSARLFVSDPAN----SAPSILDGFDHRKAMAGQRVELPCKA 248

  Fly   229 ---PNPPFPHNEEEM-TSIEVRF--IATGLDIPRTQTTNMVYTYAPGVTDGDDEVLTVTNQSTGN 287
               |.|.:...::.| ..:..||  ..|||.|..::.           :|....|..|:|: .|.
Mouse   249 LGHPEPDYRWLKDNMPLELSGRFQKTVTGLLIENSRP-----------SDSGSYVCEVSNR-YGT 301

  Fly   288 LALIRGGDGTLSRERARRSPARLAPMNASPSPRPGQDGKPLPKPVIRSSVEHHVFTDTNFTLDCE 352
            ..:|    |.|..::         |:.|:.|||.           ::|||...|      :|.| 
Mouse   302 AKVI----GRLYVKQ---------PLKATISPRK-----------VKSSVGSQV------SLSC- 335

  Fly   353 QSAYVESVYGME-----WFTPSRDENRIFASQSRTDPKTRNSTHQTG--RSTLTVLNAQPSDTGL 410
                  ||.|.|     |:......|            ...:...||  .:.|.:.:...||.|.
Mouse   336 ------SVTGNEDQELSWYRNGEILN------------PGKNVRITGLNHANLIMDHMVKSDGGA 382

  Fly   411 YKC-VTTDN-SNQN-----VQRATYRIKVLKQNESYLNVGEPSGHYNVQEYANRTIQMTANFEGF 468
            |:| |..|. |.|:     ::..|.:| :...:|..::..||             :.:..|.:|.
Mouse   383 YQCFVRKDKLSAQDYVQVVLEDGTPKI-ISAFSEKVVSPAEP-------------VSLVCNVKGT 433

  Fly   469 PTPSFSWFKPDGTEVRQSENNFKILSTELSTMLQVLN---AQLQDSGTYVLRGSNSFGVVQREYN 530
            |.|:.:|...|...::.|.:....:.|....::..||   :|::|.|.|....:||.|||..:..
Mouse   434 PLPTVTWTLDDDPILKGSGHRISQMITSEGNVVSYLNISSSQVRDGGVYRCTANNSAGVVLYQAR 498

  Fly   531 VSVMDAPALK-MSDAYVQVGSVARLECTVRSYP---------PAIVTFFFRPCSLEPQWP----- 580
            ::|....::: |.:.....|....:.|.|..||         ..::.|..|..:.|....     
Mouse   499 INVRGPASIRPMKNITAIAGRDTYIHCRVIGYPYYSIKWYKNANLLPFNHRQVAFENNGTLKLSD 563

  Fly   581 ----------TCSVLNQ----------------NFSLPSEQEKY--------------------- 598
                      ||:||.|                .|..|.|..::                     
Mouse   564 VQKEVDEGEYTCNVLVQPQLSTSQSVHVTVKVPPFIQPFEFPRFSIGQRVFIPCVVVSGDLPITI 628

  Fly   599 --QFQTRPRPGKLSVE----------RIYEVSFLPTEPGILTCIAQNIIDGKERRTLTKAHVLLG 651
              |...||.|..|.|.          ||..:|.:  ..|..||||:|     |...:.....|:.
Mouse   629 TWQKDGRPIPASLGVTIDNIDFTSSLRISNLSLM--HNGNYTCIARN-----EAAAVEHQSQLIV 686

  Fly   652 NISENMTIYGFDKDHKIAKEDNVNFTCEALAYHFDGNLKW-FINGEDLKESDSVHIETSHTKYSY 715
            .:.....:...|:|....|.  |...|.|..|... .:.| |..|..:.:...:.: ....:...
Mouse   687 RVPPKFVVQPRDQDGIYGKA--VILNCSAEGYPVP-TIVWKFSKGAGVPQFQPIAL-NGRIQVLS 747

  Fly   716 KSTVHITTISDRDRGTYECRAYHNDKDAVYSSREIDLYVHDP----SAPQWTNGGQEGHSKIKRK 776
            ..::.|..:.:.|.|.|.|:. .||..|.. |:.:.|.|..|    |.|..|...|         
Mouse   748 NGSLLIKHVVEEDSGYYLCKV-SNDVGADV-SKSMYLTVKIPAMITSYPNTTLATQ--------- 801

  Fly   777 LSQTLELECASTAVPVAIVRWFKDDKEVTESKLRHIIE-KE------SKLLITHLYPGDEGVYKC 834
             .|..|:.|.:......||||.|:|:.:.....|:::. ||      |.|.|......|.|.:.|
Mouse   802 -GQRKEMSCTAHGEKPIIVRWEKEDRIINPEMARYLVSTKEVGEEVISTLQILPTVREDSGFFSC 865

  Fly   835 VVENRLDRIERSFTVVISDLPG-------------ISMAWVWFGVILFLILIGLCVFLAVRYQKE 886
            ...|..........:.:.:.|.             |::.|.                        
Mouse   866 HAINSYGEDRGIIQLTVQEPPDPPEIEIKDVKARTITLRWT------------------------ 906

  Fly   887 HKRHLALKAAGLANFEEGAVGHINPDLTLDEQAELLPYNRE-------FEFPRENLKLGKQLGAG 944
                                      :..|..:.:..|:.|       ::..:....:..||.:.
Mouse   907 --------------------------MGFDGNSPITGYDIECKNKSDSWDSAQRTKDVSPQLNSA 945

  Fly   945 AFGVVLKGEAKGIR--------REEPTTTVAVKMVKATADNEVVRALVSELKIMVHLGQHLNVVN 1001
            ....:.......||        :.||:..:.:     |||.........|:.:.....|.:.   
Mouse   946 TIIDIHPSSTYSIRMYAKNRIGKSEPSNEITI-----TADEAAPDGPPQEVHLEPTSSQSIR--- 1002

  Fly  1002 LLGAVTKNIAKRELMVIV---------EYCRFGNIQNFLLRNRKCFINQINPDTDHIDPSIMTQR 1057
                ||....|:.|...:         ||...||.|          .|.|:.||.. |..:.|  
Mouse  1003 ----VTWKAPKKHLQNGIIRGYQIGYREYSTGGNFQ----------FNIISIDTTG-DSEVYT-- 1050

  Fly  1058 MSDNYELHRDTNGGGLKYANVGFPIHSYINEPHNNNTQPPTHRRNSDNDPRSGTRAGRTGSGTAT 1122
             .||..          |:...|..:.:                            ..|.|:|.::
Mouse  1051 -LDNLN----------KFTQYGLVVQA----------------------------CNRAGTGPSS 1076

  Fly  1123 YSYDRQMDTCATVMTTVPEDDQIMSNNSVQPAWRSNYKTDSTEAMTVTTVDL-ISWAFQVARGMD 1186
            ..          ::||..||             ..:|..::.:|:..:...: |||:        
Mouse  1077 QE----------IITTTLED-------------VPSYPPENVQAIATSPESISISWS-------- 1110

  Fly  1187 YLSSKKVLHGDLAARNIL----LCEDNVVKICDFGLARSMYRGDNYKKSENGKLPIKWLALESLS 1247
             ..||:.|:|.|....::    |.:..:.:|.:....:.....|..:|..|..:.:  ||.....
Mouse  1111 -TLSKEALNGILQGFRVIYWANLIDGELGEIKNVTTTQPSLELDGLEKYTNYSIQV--LAFTRAG 1172

  Fly  1248 DHVFSTYSDVWSYGIVLWEMFSLAKVPYPG 1277
            |.|.|.            ::|:..|...||
Mouse  1173 DGVRSE------------QIFTRTKEDVPG 1190

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG 346..432 CDD:214652 22/99 (22%)
Ig <363..432 CDD:299845 17/82 (21%)
Ig 466..533 CDD:299845 18/69 (26%)
IG_like 672..754 CDD:214653 17/82 (21%)
Ig 674..739 CDD:143165 12/65 (18%)
IGc2 779..840 CDD:197706 19/67 (28%)
PKc_like 927..1332 CDD:304357 62/380 (16%)
Pkinase_Tyr 935..1329 CDD:285015 61/365 (17%)
DscamXP_006522949.1 Ig 15..115 CDD:386229 7/28 (25%)
IGc2 239..300 CDD:197706 14/72 (19%)
IG 320..400 CDD:214652 26/115 (23%)
Ig_3 410..488 CDD:372822 17/90 (19%)
IGc2 518..575 CDD:197706 8/56 (14%)
Ig 596..686 CDD:386229 20/96 (21%)
Ig_DSCAM 707..784 CDD:143211 17/80 (21%)
Ig 802..889 CDD:386229 20/86 (23%)
FN3 885..978 CDD:238020 12/147 (8%)
FN3 986..1083 CDD:238020 25/165 (15%)
FN3 1091..1184 CDD:238020 20/115 (17%)
FN3 1189..1278 CDD:238020 2/2 (100%)
Ig_3 1301..1363 CDD:372822
FN3 1380..1470 CDD:238020
FN3 1486..1555 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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