DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pvr and kdrl

DIOPT Version :10

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:XP_017952305.2 Gene:kdrl / 100495109 XenbaseID:XB-GENE-6071790 Length:1329 Species:Xenopus tropicalis


Alignment Length:1391 Identity:360/1391 - (25%)
Similarity:581/1391 - (41%) Gaps:350/1391 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 PLMTPCKSAIILDAQTSTTLKCEDDEPMSWWTSQSQYVHVKSFDNTEDPARPFGTSLHLIEVTAD 111
            |:::|.|..:.::...|.|..|.....:.|..::..::..:.|........|........::|  
 Frog    35 PVISPRKDHVHINKGESFTFTCRGSGKLKWDLAEMSHLSNRRFSILPQCRGPDENQRVCSQLT-- 97

  Fly   112 YVAAYYCVKTSKFSQIAKEEQSDEAMIELVNQGYA-----SSIYVYVNDPDTKLVDSH----NVV 167
                           |:....:|..:|....:|.:     ::||:||.|.....|:..    .::
 Frog    98 ---------------ISNAHPNDTGLISCHYRGSSNLKRIATIYLYVKDDAQPFVEERTEDPELI 147

  Fly   168 TARQYTDVVIPCKPAMPDTEVLLETSNGEMHSSKSVG----RYDPQRGF-----------TIEIR 217
            |......|:|||:...||..|.|.    .:.|.|.|.    .::|::||           .:|..
 Frog   148 TYTNEEMVIIPCRVTSPDYRVSLR----GLFSKKQVNTPEMTWNPKKGFIFSSPPNSVQEVLECV 208

  Fly   218 SIVDGGDYYCRPNPPFPHNEEEMTSIEVRFIATGLDIPRTQTTNMVYTYAPGVTDGDDEVLTVTN 282
            ::|:|..:                        :.|.|.:.:..|:..|             |||.
 Frog   209 AVVNGKKF------------------------SSLYILQKENYNVTIT-------------TVTA 236

  Fly   283 QSTGNLALIRGGDGTLSRERARRSPARLAPMNASPSPRPGQDGKPLPKPVIRSSVEHHVFTDTNF 347
            .:|                       ||..            |.||                   
 Frog   237 SAT-----------------------RLVV------------GDPL------------------- 247

  Fly   348 TLDCEQSAYVESVYGMEWFTPSRDENRIFASQSRTDPKTRNSTHQTGRSTLTVLNAQPSDTGLYK 412
            ||.|:......|...::|.    ..|::..|.|..   :...|...|..|:.:.:....:.|:|.
 Frog   248 TLFCKGETGYNSRVLLDWV----HGNKVLKSISTF---SNEQTPYVGTRTVNISHISLHEQGVYT 305

  Fly   413 C---VTTDNSNQNVQRATYRIKVLKQNESYLNVGEPSGHYNVQEYANRTIQMTANFEGFPTPSFS 474
            |   :.|    ||.::...|:    ..:.:||:..|.|..:......:.:::||..:..|.|..:
 Frog   306 CRDRIYT----QNFKKIYIRV----YEKGFLNISTPDGQIHEVNEGTKQVKLTAKVDALPKPVVT 362

  Fly   475 WFKPDGTEVRQSENNFKILSTELSTMLQVLNAQLQDSGTYVLRGSNSFGVVQREYNVS------V 533
            |:: :|..:..:...:|....:.|  |.:.|...:|||:|.:..|||:      ||.|      |
 Frog   363 WYR-NGVPIGANHTCYKPEPEDYS--LVIKNPSEKDSGSYTMVLSNSW------YNKSISFILIV 418

  Fly   534 MDAPAL--KMSDAYVQ----VGSVARLECTVRSYPPAIVTFFFRPCSLE-------------PQW 579
            ...|.:  |.:|..:.    :|......|||..:|...:.:.|:||...             |..
 Frog   419 NVKPKIYEKETDFNIPKPLLLGEPHNFRCTVYGHPLPQIRWEFQPCHSSNTLCEVDDAIPRIPVI 483

  Fly   580 PTCSVLNQNFS--LPSEQEKYQFQTRPRPGKLSVERIYEVSFLPT-----EPGILTCIAQNIIDG 637
            |..|..|::.|  .|..:|....||:   .||       ||.|.|     :.||..|||.|:: .
 Frog   484 PERSHTNESISDARPVIEESIMEQTK---NKL-------VSILTTSRYSNQSGIFFCIASNVM-A 537

  Fly   638 KERRTLTKAHVLLGNISENMT------IYGFDKDHKIAKEDNVNFTCEALAYHFDGNLKWFING- 695
            :.:|::   |.:|.:|....|      ::|.|          |...|.|..|.:. ||.|...| 
 Frog   538 EVKRSM---HFILSDIKPEETKERTEALHGSD----------VKLVCRAERYIYT-NLSWTFPGK 588

  Fly   696 EDLKESDSVH---IETSHTKYSYKSTVHITTISDRDRGTYECRAYHNDKDAVYSSRE-----IDL 752
            |::...:.||   .:.::.:|:....:.:..::....||:.|.|.:     :|:..:     |||
 Frog   589 EEIPCLEEVHPQMTKNTYQEYTMSCLLLLKNVTQELAGTFRCSATN-----LYTGMQEEKNVIDL 648

  Fly   753 YVHDPSAPQWTNGGQEGHSKIKRKL-------SQTLELECASTAVPVAIVRWFKDDKEVTESKLR 810
            .:.:..|||           :.::|       |.||.|||.....|...:.|.|:...:..:...
 Frog   649 VIKEKEAPQ-----------VIQELVPMVVNSSSTLFLECRVNGTPTPTIIWLKNGYVIKPASGI 702

  Fly   811 HIIEKESKLLITHLYPGDEGVYKCVVENRLDRIERSFTVVI------SDLPGISMAWVWFGVILF 869
            .:: ..|.|:|..:...|||||.|...|.|.::..|..:.:      |::..|.:........||
 Frog   703 TLV-YNSTLVIERVKKDDEGVYICEAVNELGKVSTSAFITVQGVEEKSNIEVIILVCTGVAATLF 766

  Fly   870 LILIGLCVFLAVRYQKEHKRHLALKAAGLANFEEGAVGHINPD-LTLDEQAELLPY-NREFEFPR 932
            .:|:.|.:      :|..|.|.:....|..:.      .::|| :.||||.|.||| :.::||||
 Frog   767 WLLLTLFI------RKLKKPHGSDMKTGYLSI------IMDPDEIPLDEQCERLPYDSSKWEFPR 819

  Fly   933 ENLKLGKQLGAGAFGVVLKGEAKGIRREEPTTTVAVKMVKATADNEVVRALVSELKIMVHLGQHL 997
            :.|.|||.||.||||.|::..|.||.:.....||||||:|..|.|...:||:|||||::|:|.||
 Frog   820 DRLSLGKTLGHGAFGKVVEASAFGIDKSSTCKTVAVKMLKECATNNERKALMSELKILIHIGHHL 884

  Fly   998 NVVNLLGAVTKNIAKRELMVIVEYCRFGNIQNFLLRNRKCFINQINPDTDHIDPSIMTQRMSDNY 1062
            ||||||||.||  ....||||||||::||:.|:|...|..||                       
 Frog   885 NVVNLLGACTK--PGGPLMVIVEYCKYGNLSNYLRSKRGDFI----------------------- 924

  Fly  1063 ELHRDTNGGGLKYANVGFPIHSYINEPHNNNTQPPTHRRNSDNDPRSGTRAGRTGSGTATYSYDR 1127
                     ..||......:|..|::      .....:|..::...:|:.|........:||...
 Frog   925 ---------AYKYQEAEKALHGSISD------LSELIKRRLESVASTGSSASSGFIEDKSYSDSE 974

  Fly  1128 QMDTCATVMTTVPEDDQIMSNNSVQPAWRSNYKTDSTEAMTVTTVDLISWAFQVARGMDYLSSKK 1192
            :.|          ||.:.:|.           |..|.|       |||.::||||:||::|:|:|
 Frog   975 EED----------EDHEDVSK-----------KLLSME-------DLICYSFQVAKGMEFLASRK 1011

  Fly  1193 VLHGDLAARNILLCEDNVVKICDFGLARSMYRGDNYKKSENGKLPIKWLALESLSDHVFSTYSDV 1257
            .:|.|||||||||.|:||||||||||||.:|:..:|.:..:.:||:||:|.|::.|.:::|.|||
 Frog  1012 CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPEAIFDKIYTTQSDV 1076

  Fly  1258 WSYGIVLWEMFSLAKVPYPGIDPNQELFNKLNDGYRMEKPKFANQELYEIMLECWRKNPESRPLF 1322
            ||:|::|||:|||...||||:..:::...:|.:|.||..|.:.:.|:|:.||:||:..|..||.|
 Frog  1077 WSFGVLLWEIFSLGASPYPGVQIDEDFCCRLKEGTRMRAPDYCSPEIYQTMLDCWQGEPTDRPTF 1141

  Fly  1323 AELEKRFANMLGEDV---ASHYLDLN 1345
            .:|.:|..::|...|   ...|:.||
 Frog  1142 TDLVERLGDLLQASVQQEGKDYIPLN 1167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG_like 346..432 CDD:214653 18/88 (20%)
Ig strand C 363..366 CDD:409353 0/2 (0%)
Ig strand E 396..400 CDD:409353 1/3 (33%)
Ig strand F 410..415 CDD:409353 2/7 (29%)
Ig strand G 425..428 CDD:409353 0/2 (0%)
Ig 458..533 CDD:472250 20/80 (25%)
Ig strand B 459..463 CDD:409353 0/3 (0%)
Ig strand C 472..476 CDD:409353 0/3 (0%)
Ig strand E 497..503 CDD:409353 2/5 (40%)
Ig strand F 513..518 CDD:409353 1/4 (25%)
Ig 671..>742 CDD:472250 16/74 (22%)
Ig strand B 674..678 CDD:409353 1/3 (33%)
Ig strand C 687..691 CDD:409353 2/3 (67%)
Ig strand E 717..721 CDD:409353 0/3 (0%)
Ig strand F 731..736 CDD:409353 2/4 (50%)
Ig 779..851 CDD:472250 20/71 (28%)
Ig strand B 781..785 CDD:409570 2/3 (67%)
Ig strand C 794..798 CDD:409570 0/3 (0%)
Ig strand E 816..821 CDD:409570 2/4 (50%)
Ig strand F 831..836 CDD:409570 3/4 (75%)
Ig strand G 844..847 CDD:409570 0/2 (0%)
Protein Kinases, catalytic domain 927..1332 CDD:473864 157/404 (39%)
kdrlXP_017952305.2 IG_like 43..129 CDD:214653 13/102 (13%)
Ig_3 233..307 CDD:464046 22/134 (16%)
Ig 327..418 CDD:472250 24/99 (24%)
Ig strand B 347..351 CDD:409353 0/3 (0%)
Ig strand C 360..364 CDD:409353 0/3 (0%)
Ig strand E 384..388 CDD:409353 2/5 (40%)
Ig strand F 398..403 CDD:409353 1/4 (25%)
Ig strand G 411..414 CDD:409353 1/2 (50%)
Ig_3 551..634 CDD:464046 19/93 (20%)
I-set 656..742 CDD:400151 24/97 (25%)
Ig strand B 673..677 CDD:409353 2/3 (67%)
Ig strand C 686..690 CDD:409353 0/3 (0%)
Ig strand E 708..712 CDD:409353 2/3 (67%)
Ig strand F 722..727 CDD:409353 3/4 (75%)
Ig strand G 735..738 CDD:409353 0/2 (0%)
Protein Kinases, catalytic domain 814..1155 CDD:473864 158/408 (39%)

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