DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pvr and pdgfra

DIOPT Version :9

Sequence 1:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster
Sequence 2:NP_001096290.1 Gene:pdgfra / 100124862 XenbaseID:XB-GENE-6072920 Length:1091 Species:Xenopus tropicalis


Alignment Length:1535 Identity:355/1535 - (23%)
Similarity:561/1535 - (36%) Gaps:563/1535 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 ENGAPLMTPCKSAIILDAQTSTTLKCEDDEPMSWWTSQSQYVHVKS------FDNTEDPARPFGT 101
            :|..|.:.|.|..::....:|.:|.|..:..:||     |:.|.:|      ..:.|:.:..|.:
 Frog    25 QNPLPSIFPEKDELVQRLHSSFSLTCTGESELSW-----QHPHSESELGNVVIGSEENNSGLFVS 84

  Fly   102 SLHLIEVTADYVAAYYCVKTSKFSQIAKEEQSDEAMIELVNQGYASSIYVYVNDPDTKLVDS--- 163
            .|.:...:|.....|.|        .....|::::.||      .:.||:||.|.:...|..   
 Frog    85 VLEVTNASASNTGLYTC--------YYNHTQTEDSEIE------GTDIYIYVPDTNVPFVPPGLF 135

  Fly   164 HNVVTARQYTDVVIPCKPAMPDTEVLLETSNGEMHSSKSVGR-YDPQRGFTIEIRSIVDGGDYYC 227
            .:::...:.....|||:...|.::|.|::    :.:||:|.. ||.::||....:.    |.|.|
 Frog   136 DHIIVVEEDESAFIPCRTTDPSSQVTLKS----IENSKTVSAFYDSKQGFVGNFQP----GSYIC 192

  Fly   228 RPNPPFPHNEEEMTSIEVRFIATGLDIPRTQTTNMVYTYAPGVTDGDDEVLTVTNQSTGNLALIR 292
                                        .|.:..|||.        .|..:..|.::|.|:::  
 Frog   193 ----------------------------ETVSNKMVYQ--------TDLYILQTWKATHNISV-- 219

  Fly   293 GGDGTLSRERARRSPARLAPMNASPSPRPGQDGKPLPKPVIRSSVEHHVFTDTNFTLDCEQSAYV 357
                               .|.|             |:.|.|        |....|:.|  ....
 Frog   220 -------------------EMEA-------------PQTVFR--------TGETITISC--IVLE 242

  Fly   358 ESVYGMEWFTPSR---------DENRIFASQSRTDPKTRNSTHQTGRSTLTVLNAQPSDTGLYKC 413
            ..|..::|:.|.:         :|:|:        |..|..      .|||:.||...|:|.|:|
 Frog   243 NEVVELKWYYPGQQRGVGKRNVEESRV--------PSQRLV------YTLTIANATADDSGEYQC 293

  Fly   414 VTTDNSNQNVQRATYRIKVLKQ------NESYLNVGEPSGHYNVQEYAN--RTIQMTANFEGFPT 470
            .        |..||...||:|:      .:.::|: ||.  :..:||||  .......:...:|.
 Frog   294 A--------VLHATLDNKVIKKTNITVHEKGFINL-EPM--FGSEEYANLHEVKSFIVDLHAYPC 347

  Fly   471 PSFSWFKPDGTEVRQSENNFKILSTELST-------MLQVLNAQLQDSGTYVLRGSNSFGVVQRE 528
            |...|.|.:.|   .|||..:|.::.::|       .|:::.|:.:|||.|.|...|........
 Frog   348 PRVFWLKDNRT---LSENLTEITTSTVTTKETRFQSKLKLIRAKEEDSGLYTLVAQNDAETKSYS 409

  Fly   529 YNVSV-MDAPALKMSDAYVQVGSVARLECTVRSYPPAIVTFFFRPCSLEPQWPTCSVLNQNFSLP 592
            :.:.: :.|..|::.|.:........:.|..:..|...|           :|..|          
 Frog   410 FILQIKVPALILELVDEHHGTSGEQTVGCLAKGMPVPDV-----------EWLVC---------- 453

  Fly   593 SEQEKYQFQTRPRPGKLSVERIYEVSFLPTEPGILTCIAQNIIDGKERRTLTKAHVLLGNISENM 657
                                                                             
 Frog   454 ----------------------------------------------------------------- 453

  Fly   658 TIYGFDKDHKIAKEDNVNFTCEALAYHFDGNLKW---FINGEDLKESDSVHIETSHTKYSYKSTV 719
                  ||.|....|.:                |   .|||.::         :..|...|::|:
 Frog   454 ------KDIKRCNNDTL----------------WSLLAINGSEI---------SMETHQDYENTI 487

  Fly   720 HITTISDRDRGTYECRAYHNDKDAVYSSREIDLYVHDPSAPQWTNGGQEGHSKIKRKLSQTLELE 784
                   ..:.|:                                          :|:.:|:.:.
 Frog   488 -------ESQVTF------------------------------------------KKVEETMAIR 503

  Fly   785 CASTAVPVAIVRWFKDDKEVTESKLRHIIEKESKLLITHLYPGDEGVYKCVVENRLDRIERSFTV 849
            |.:           ::|..|        :.:|.||:...|                   ....||
 Frog   504 CIA-----------RNDLGV--------VARELKLVAPTL-------------------RSELTV 530

  Fly   850 VISDLPGISMAWVWFGVILFLILIGLCVFLAVRYQKEHKRHLALKAAGLANFEEGAVGHINPD-- 912
            ..:.|           |:|.:::|.|.|.:.:..||..           .......:..|:||  
 Frog   531 AAAVL-----------VLLVIVIISLIVLVIIWKQKPR-----------YEIRWRVIESISPDGH 573

  Fly   913 --LTLDEQAELLPYNREFEFPRENLKLGKQLGAGAFGVVLKGEAKGIRREEPTTTVAVKMVKATA 975
              :.:|...  |||:..:||.|:.|.||:.||:||||.|::|.|.|:.|.:|...|||||:|.||
 Frog   574 EYIYVDPMQ--LPYDSRWEFQRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTA 636

  Fly   976 DNEVVRALVSELKIMVHLGQHLNVVNLLGAVTKNIAKRELMVIVEYCRFGNIQNFLLRNRKCFIN 1040
            .:...:||:||||||.|||.|||:||||||.||:   ..:.:|.|||.:|::.|:|.:||..|.:
 Frog   637 RSSEKQALMSELKIMTHLGAHLNIVNLLGACTKS---GPIYIITEYCFYGDLVNYLHKNRDNFQS 698

  Fly  1041 QINPDTDHIDPSIMTQRMSDNYELHRDTNGGGLKYANVGFPIHSYINEPHNNNTQPPTHRRNSDN 1105
            : :|:....|..|.                 ||..|:..  ..||:.....||            
 Frog   699 R-HPEKSKKDLDIF-----------------GLNPADES--TRSYVILSFENN------------ 731

  Fly  1106 DPRSGTRAGRTGSGTATYSYDRQMDTCATVMTTVP--EDDQIMSNNSVQ------PAWRSNYKT- 1161
                           ..|...:|.||    |..||  |..:....:.:|      ||   :||. 
 Frog   732 ---------------GDYMDMKQADT----MQYVPMLEMKEPSKYSDIQRSLYDRPA---SYKKK 774

  Fly  1162 --------------DSTEAMTVTTVDLISWAFQVARGMDYLSSKKVLHGDLAARNILLCEDNVVK 1212
                          |..:.:||  :||:|:.:||||||::|:||..:|.||||||:||....:||
 Frog   775 PLSEVKNILSDDGFDGFDGLTV--LDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAHGKIVK 837

  Fly  1213 ICDFGLARSMYRGDNYKKSENGKLPIKWLALESLSDHVFSTYSDVWSYGIVLWEMFSLAKVPYPG 1277
            ||||||||.:....||....:..||:||:|.||:.|::::|.|||||:||:|||:|||...||||
 Frog   838 ICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSFGILLWEIFSLGGTPYPG 902

  Fly  1278 IDPNQELFNKLNDGYRMEKPKFANQELYEIMLECWRKNPESRPLFAELEKRFANMLG-------E 1335
            :..:...:||:..||||.||..|..|:|:||::||...||.||.|..|.....::|.       |
 Frog   903 MIVDSTFYNKIKSGYRMAKPDHATHEVYDIMVKCWNSEPEKRPSFRHLSDIVESLLPMEYKRCYE 967

  Fly  1336 DVASHYL------------DLNNPYM---QSNIEYMKKQSTDYLALMGSPDELAPAAPRYVNGHI 1385
            .|...:|            |.:|.|:   ..|...||.:.:.:       ||...:|.   :|:|
 Frog   968 TVLHDFLKSDHPAVTRMRSDSDNSYIGVTYKNENKMKDRESGF-------DEQRLSAD---SGYI 1022

  Fly  1386 VPDIRIEELPDDYMEMSRDSDPDACTAIFSPTRLEGESSDFPDFSSETTFNFPGARQSPTLSNNL 1450
            :|      ||        |.||.:          |.|||.....||:|         |...:...
 Frog  1023 IP------LP--------DIDPVS----------EDESSKRNRHSSQT---------SEESAIET 1054

  Fly  1451 NSGSSKPLRKKNGMPTVDVADQAPEEIPMLHRSSTGSDGS 1490
            .|.||..::::         |:..|:|.|:  ...|.|.|
 Frog  1055 GSSSSTFIKRE---------DETIEDIEMM--DDIGIDSS 1083

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PvrNP_001162911.1 IG 346..432 CDD:214652 21/94 (22%)
Ig <363..432 CDD:299845 18/77 (23%)
Ig 466..533 CDD:299845 18/73 (25%)
IG_like 672..754 CDD:214653 9/84 (11%)
Ig 674..739 CDD:143165 8/67 (12%)
IGc2 779..840 CDD:197706 8/60 (13%)
PKc_like 927..1332 CDD:304357 164/427 (38%)
Pkinase_Tyr 935..1329 CDD:285015 161/416 (39%)
pdgfraNP_001096290.1 Ig_3 29..101 CDD:404760 16/76 (21%)
Ig 215..313 CDD:416386 31/163 (19%)
Ig strand A 215..219 CDD:409353 1/3 (33%)
Ig strand A' 226..230 CDD:409353 2/11 (18%)
Ig strand B 232..241 CDD:409353 2/10 (20%)
Ig strand C 246..251 CDD:409353 0/4 (0%)
Ig strand C' 254..256 CDD:409353 0/1 (0%)
Ig strand D 260..268 CDD:409353 1/7 (14%)
Ig strand E 272..280 CDD:409353 3/13 (23%)
Ig strand F 290..296 CDD:409353 2/13 (15%)
Ig strand G 301..307 CDD:409353 2/5 (40%)
Ig 316..416 CDD:416386 25/105 (24%)
PTKc_PDGFR_alpha 558..960 CDD:173653 172/462 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 299 1.000 Domainoid score I1422
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D126783at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.