DRSC/TRiP Functional Genomics Resources

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Protein Alignment Snx6 and VPS5

DIOPT Version :9

Sequence 1:NP_001245939.1 Gene:Snx6 / 34126 FlyBaseID:FBgn0032005 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_014712.2 Gene:VPS5 / 854235 SGDID:S000005595 Length:675 Species:Saccharomyces cerevisiae


Alignment Length:506 Identity:105/506 - (20%)
Similarity:188/506 - (37%) Gaps:128/506 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 DDSNLLNSPSTNNG---ATME---IASPTNPLATPPATG-GAPAPSGATNGSGSATSPDSSSSAP 63
            ||.|  .....|.|   |::|   :.....||...|.|| ...:|:.....|.........|..|
Yeast   211 DDRN--ERRENNEGKFTASVEKNILEQVDRPLYNLPQTGANISSPAEVEENSEKFGKTKIGSKVP 273

  Fly    64 ATPAVLGENALHVEISDALSEKE----KVKFTVHTRTTLPGFSKKDNNVVRQHEEFVWLHDRIEE 124
            .|...:   |..||:.|.:...|    .|::||.:.::|  ...|...|.|::.:|.||:.:::.
Yeast   274 PTEKAV---AFKVEVKDPVKVGELTSIHVEYTVISESSL--LELKYAQVSRRYRDFRWLYRQLQN 333

  Fly   125 NDDYAGYIIPPCPPRPDFDASREKLQRLGEGEGNMTKEEFKKMKSELEAEYLATFKKTVAMHEVF 189
            |  :.|.:||| ||        || |.:|..:.|..:....:|:|                   .
Yeast   334 N--HWGKVIPP-PP--------EK-QSVGSFKENFIENRRFQMES-------------------M 367

  Fly   190 LRRLASHPVFRVDQHLKVFLEYDQDLCAKPRKKMAIFGGFVKSLGKTTDEILLSATVRDVNDFFE 254
            |:::...||.:.|:...:||..| |..::.:|:..:.|               |..:.|.||..|
Yeast   368 LKKICQDPVLQKDKDFLLFLTSD-DFSSESKKRAFLTG---------------SGAINDSNDLSE 416

  Fly   255 ---NELQFL---------------TEYHGHLREAALRT------------EKMTQRHKDVGDSHQ 289
               :|:|.|               .|.|......:..:            || .|:..::.|:.:
Yeast   417 VRISEIQLLGAEDAAEVLKNGGIDAESHKGFMSISFSSLPKYNEADEFFIEK-KQKIDELEDNLK 480

  Fly   290 KISNALTQLST--------TEK--GNVETFVA------------KTAEIFERIKNLETRVASDQD 332
            |:|.:|..:.|        ||:  ..|||..:            ..|::.:.||:...|.:..:.
Yeast   481 KLSKSLEMVDTSRNTLAASTEEFSSMVETLASLNVSEPNSELLNNFADVHKSIKSSLERSSLQET 545

  Fly   333 LKLGDTLRYYQRDSDAAKALLIRRLRCLAAYEAANRNLEKARSK----NKDVHAP------LEVQ 387
            |.:|..|..|.|...:.||:..:|.:..........::.|..|:    .:::|:.      .|.|
Yeast   546 LTMGVMLDDYIRSLASVKAIFNQRSKLGYFLVVIENDMNKKHSQLGKLGQNIHSEKFREMRKEFQ 610

  Fly   388 EAETAQAEACEKFESMSACGKEELIGFRNRRVAAFKKSLVELSELEIKHAK 438
            ..|.......::::::....|:|..||...::..|:..:....|..|:..|
Yeast   611 TLERRYNLTKKQWQAVGDKIKDEFQGFSTDKIREFRNGMEISLEAAIESQK 661

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx6NP_001245939.1 PX_SNX5_like 72..212 CDD:132802 35/143 (24%)
BAR_SNX5_6 228..452 CDD:153305 49/273 (18%)
VPS5NP_014712.2 PX_Vps5p 281..390 CDD:132771 34/141 (24%)
BAR_Vps5p 460..673 CDD:153311 39/203 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
21.870

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