DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Snx6 and snx-3

DIOPT Version :9

Sequence 1:	NP_001245939.1	Gene:	Snx6 / 34126	FlyBaseID:	FBgn0032005	Length:	455	Species:	Drosophila melanogaster
Sequence 2:	NP_492437.1	Gene:	snx-3 / 189240	WormBaseID:	WBGene00006503	Length:	162	Species:	Caenorhabditis elegans

Alignment Length:	171	Identity:	37/171 - (21%)
Similarity:	80/171 - (46%)	Gaps:	31/171 - (18%)

- Green bases have known domain annotations that are detailed below.

  Fly    44 SGATNGSGSATSPDSSSSAPATPAVLGENALHVEISDALSE-KEKVKFT---VHTRTTLPGFSKK 104
            |||:......:...:...|.|.||    |.|.:|:.:.::. ..|:::|   :..|:.||.|.:|
Worm     3 SGASATQRIPSKRQTLDEAYAPPA----NFLEIEVINPITHGVGKMRYTDYEIRMRSNLPVFKQK 63

  Fly   105 DNNVVRQHEEFVWLHDRIEENDDYAGYIIPPCPPRPDFDASREKLQRLGEGEGNMTKEEFKKMKS 169
            :::|.|::.:|.|:...:|.:   :..::|..|                 |:....:..|:....
Worm    64 ESSVRRRYSDFEWVRAELERD---SKIVVPTLP-----------------GKSFKRQLPFRSDDG 108

  Fly   170 ELEAEYLATFKKTVAMHEVFLRRLASHPVFRVDQHLKVFLE 210
            ..|.|::...:|.:   |:|:.::|.||:.:.::.|.:||:
Worm   109 IFEEEFIENRRKAL---ELFINKVAGHPLAQNERSLHIFLQ 146

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Snx6	NP_001245939.1	PX_SNX5_like	72..212	CDD:132802	30/143 (21%)
Snx6	NP_001245939.1	BAR_SNX5_6	228..452	CDD:153305
snx-3	NP_492437.1	PX_SNX3_like	28..150	CDD:132804	29/142 (20%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910