DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Su(var)205 and cbx6

DIOPT Version :9

Sequence 1:NP_476755.1 Gene:Su(var)205 / 34119 FlyBaseID:FBgn0003607 Length:206 Species:Drosophila melanogaster
Sequence 2:NP_001016617.1 Gene:cbx6 / 549371 XenbaseID:XB-GENE-951161 Length:361 Species:Xenopus tropicalis


Alignment Length:204 Identity:49/204 - (24%)
Similarity:81/204 - (39%) Gaps:51/204 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 EEEYAVEKIIDRRVRKGKVEYYLKWKGYPETENTWEPENNLDCQDLIQQYEASRKDEEKSAASKK 85
            |..:|.|.|:.||:|||::||.:||||:....:|||||.|:....||..:|...:::|.....|:
 Frog     8 ERVFAAESIMKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIVAFEQKEREQEIYGPKKR 72

  Fly    86 -DRPSSSAKAKETQGRA-------------SS------STSTASKRKSE---------------E 115
             .:|.:.......|..|             ||      |::...:.|.:               :
 Frog    73 GPKPKTFLMKARAQAEALRLNDVHFTMKPGSSPSPKLHSSAAVHRLKKDIRRCHSMSRRPLPRPD 137

  Fly   116 PTAPSGNKS--KRTTDAEQDTIPVSGSTGFDRGLEAEKILGASDNNGRLTFLIQFKGVDQAEMVP 178
            ||||||..|  :.......:|:.:.......|..:..:|            ::..|.:|:....|
 Frog   138 PTAPSGTGSGMRPPVSPFSETVRIINRKAKPREPKRNRI------------ILNLKVIDKGTKAP 190

  Fly   179 SSVANEKIP 187
              :...|||
 Frog   191 --LGRPKIP 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)205NP_476755.1 CHROMO 24..72 CDD:237991 22/47 (47%)
ChSh 141..202 CDD:197638 8/47 (17%)
cbx6NP_001016617.1 CD_Cbx6 8..65 CDD:349295 24/56 (43%)
CBX7_C 320..351 CDD:375056
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1628171at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.