DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)205 and Cbx6

DIOPT Version :10

Sequence 1:NP_476755.1 Gene:Su(var)205 / 34119 FlyBaseID:FBgn0003607 Length:206 Species:Drosophila melanogaster
Sequence 2:NP_001387975.1 Gene:Cbx6 / 315136 RGDID:1307314 Length:414 Species:Rattus norvegicus


Alignment Length:140 Identity:38/140 - (27%)
Similarity:56/140 - (40%) Gaps:34/140 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 EEEYAVEKIIDRRVRKGKVEYYLKWKGYPETENTWEPENNLDCQDLIQQYEASRKDEEKSAASKK 85
            |..:|.|.||.||:|||::||.:||||:....:|||||.|:....||..:|...::.|.....|:
  Rat     8 ERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQKERERELYGPKKR 72

  Fly    86 D--------------------------RPSSSAKAKETQGRAS--------SSTSTASKRKSEEP 116
            .                          :||:||.:.:....|:        ......|:|....|
  Rat    73 GPKPKTFLLKARAQAEALRISDVHFSVKPSASASSPKLHSSAAVHRLKKDIRRCHRMSRRPLPRP 137

  Fly   117 TAPSGNKSKR 126
            ....||...|
  Rat   138 DPQGGNPGLR 147

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)205NP_476755.1 CD_HP1a_insect 24..72 CDD:349300 23/47 (49%)
CSD_HP1a_insect 146..198 CDD:349305
Cbx6NP_001387975.1 CD_Cbx6 8..65 CDD:349295 25/56 (45%)
CBX7_C 359..390 CDD:465385
Blue background indicates that the domain is not in the aligned region.

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