DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)205 and cbx2

DIOPT Version :9

Sequence 1:NP_476755.1 Gene:Su(var)205 / 34119 FlyBaseID:FBgn0003607 Length:206 Species:Drosophila melanogaster
Sequence 2:XP_002942815.2 Gene:cbx2 / 100491304 XenbaseID:XB-GENE-970247 Length:477 Species:Xenopus tropicalis


Alignment Length:129 Identity:39/129 - (30%)
Similarity:69/129 - (53%) Gaps:14/129 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 EEEYAVEKIIDRRVRKGKVEYYLKWKGYPETENTWEPENNLDCQDLIQQYEASRKDEEKSAASKK 85
            |:.:|.|.|:.:|:|||..||.:||:|:....|:||||.|:....|:..::  ::::||...:||
 Frog     9 EQVFAAECILSKRLRKGTAEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQ--KREQEKELRNKK 71

  Fly    86 ------DRPSSSA------KAKETQGRASSSTSTASKRKSEEPTAPSGNKSKRTTDAEQDTIPV 137
                  .||..:.      |||.:...:|||:|::|...|...:..|...:::.....:|:.||
 Frog    72 RGKRPRGRPRKNVETDIPLKAKSSSSSSSSSSSSSSSSSSSSSSDDSDADTQQRNPRPRDSHPV 135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)205NP_476755.1 CHROMO 24..72 CDD:237991 19/47 (40%)
ChSh 141..202 CDD:197638
cbx2XP_002942815.2 CD_Cbx2 9..61 CDD:349294 20/53 (38%)
CBX7_C 436..468 CDD:407338
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1628171at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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