DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)205 and cbx4

DIOPT Version :9

Sequence 1:NP_476755.1 Gene:Su(var)205 / 34119 FlyBaseID:FBgn0003607 Length:206 Species:Drosophila melanogaster
Sequence 2:NP_001096327.1 Gene:cbx4 / 100124911 XenbaseID:XB-GENE-986716 Length:507 Species:Xenopus tropicalis


Alignment Length:140 Identity:38/140 - (27%)
Similarity:60/140 - (42%) Gaps:30/140 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 EEEYAVEKIIDRRVRKGKVEYYLKWKGYPETENTWEPENNLDCQDLIQQYEASRKDEEKSAASKK 85
            |..:|||.|..:|:|||:|||.:||:|:....||||||.|:....|:..::...:.|:.....|:
 Frog     8 EHVFAVESIEKKRIRKGRVEYLVKWRGWSSKYNTWEPEENILDPRLLVAFQNRERQEQIMGYRKR 72

  Fly    86 ---------DRPSSSAKAKETQGRASSSTSTASKRKSEEPTAPSGNKSKRTTDAEQDTIPVSGST 141
                     ..||.:.::....||..|               |..|::|      .|..|:..|.
 Frog    73 GPKPKHHIVSIPSFARRSNVLNGRNDS---------------PGENRTK------LDLGPIPKSQ 116

  Fly   142 GFDRGLEAEK 151
            .....|.::|
 Frog   117 PHQYQLNSKK 126

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)205NP_476755.1 CHROMO 24..72 CDD:237991 22/47 (47%)
ChSh 141..202 CDD:197638 2/11 (18%)
cbx4NP_001096327.1 Chromo 13..60 CDD:278797 21/46 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1628171at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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