DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8419 and Trim3

DIOPT Version :9

Sequence 1:NP_609193.1 Gene:CG8419 / 34118 FlyBaseID:FBgn0031999 Length:921 Species:Drosophila melanogaster
Sequence 2:XP_038948510.1 Gene:Trim3 / 83616 RGDID:70074 Length:750 Species:Rattus norvegicus


Alignment Length:586 Identity:122/586 - (20%)
Similarity:200/586 - (34%) Gaps:184/586 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   291 RPSTP-PENTVIFTDDLKCGICLDVYTDPRTLHCLHSFCLQCLVSENFKDESLWDQDQARSEEPS 354
            |..:| ||...:....|.|.||||.|..|:.|.|||:||.:||                     .
  Rat     4 REDSPGPEVQPMDKQFLVCSICLDRYRCPKVLPCLHTFCERCL---------------------Q 47

  Fly   355 NYSLRSEMGGSSAELTATVSPARQRGSSFTLRRKKSMDRLVIRSKSDGKRSTSSIGTRFTGSFAS 419
            ||                :.|     .|.||                                  
  Rat    48 NY----------------IPP-----QSLTL---------------------------------- 57

  Fly   420 EVSTRCIRCHTCNYPTDLSLGGVRQLPQNYLLVRRIEVLRLQA------GED------VISRVWC 472
                   .|..|...:.|...||..|..|:.:...:|.:: ||      .||      |..|...
  Rat    58 -------SCPVCRQTSILPEQGVSALQNNFFISSLMEAMQ-QAPDGAHDPEDPHPLSAVAGRPLS 114

  Fly   473 SLCTEEISATYH------CISCTLNLCTLCKEAHERQRSTASHRMRSILELRRARKQKQQQMGLG 531
            ....|.....||      |.:|...:|..|:....|:..|.  .:|.::|..:|..|:|.:...|
  Rat   115 CPNHEGKEPLYHQTMEFYCEACETAMCGECRAGEHREHGTV--LLRDVVEQHKAALQRQLEAVRG 177

  Fly   532 DSSKLVLRCGIHTNFELKAFCTNCRQLACTDCLVILHKGHRHETISRAIGHQGKLLKEATDQTRP 596
                                                    |...:|.||...|.:.:        
  Rat   178 ----------------------------------------RLPQLSAAIALVGGISQ-------- 194

  Fly   597 LCQYAEHSIERLNAIARGINDRCDDIQTQVERYMQQYMDALTVHRKTLLQQISRARESKVEVVLK 661
              |..|...|.|..|:....|        :|:.:||...||.    :.|:.|..|::.    ||:
  Rat   195 --QLQERKAEALAQISAAFED--------LEQALQQRKQALV----SDLESICGAKQK----VLQ 241

  Fly   662 QQLDLEKRTQQAM-DAVRFSQELCEIGADVEILSYVTILLRRLEYCQQFKPPVDPKISDSLHFLP 725
            .|||..::.|:.: .:..|:::...:|:..|:|.....:..||........|..|..:..|..:.
  Rat   242 TQLDTLRQGQEHIGSSCSFAEQALRLGSAPEVLLVRKHMRERLAALAAQAFPERPHENAQLELVL 306

  Fly   726 KIRAPSTKDQRDIPLYG--IITMQVVEPSLCTLEWEGFSQLRLHKKADLLLHSRDADGVSLCHGG 788
            ::...    :|.:...|  :.|......::.|  .||..|..:.:.|.|.:.::|.||..:..|.
  Rat   307 EVDGL----RRSVLNLGALLTTSATAHETVAT--GEGLRQALVGQPASLTVTTKDKDGRLVRTGS 365

  Fly   789 LEINCMLKYKDSSSKFLPVEVSDNRDGTYNISFTPDAQGTLILTITINDRPIKGGPFTFQARQVR 853
            .|:...:...|...  |.|.|.|:::|||.:.:|...:|.|:|::.:..:|::|.|  |:.|.:|
  Rat   366 AELCAEITGPDGVR--LAVPVVDHKNGTYELVYTARTEGDLLLSVLLYGQPVRGSP--FRVRALR 426

  Fly   854 P 854
            |
  Rat   427 P 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8419NP_609193.1 RING 308..>334 CDD:214546 15/25 (60%)
zf-B_box 537..576 CDD:279037 1/38 (3%)
iSH2_PI3K_IA_R 583..703 CDD:304922 25/120 (21%)
Filamin 748..846 CDD:279024 26/97 (27%)
IG_FLMN 751..849 CDD:214720 27/97 (28%)
Trim3XP_038948510.1 RING-HC_TRIM3 19..63 CDD:319682 23/126 (18%)
Bbox_SF 107..159 CDD:412124 11/53 (21%)
BBC 164..290 CDD:128778 35/191 (18%)
IG_FLMN 328..425 CDD:214720 28/102 (27%)
NHL_TRIM2_like 477..750 CDD:271330
NHL repeat 495..534 CDD:271330
NHL repeat 542..581 CDD:271330
NHL repeat 584..620 CDD:271330
NHL repeat 628..668 CDD:271330
NHL repeat 677..717 CDD:271330
NHL repeat 720..746 CDD:271330
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D489543at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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