DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8419 and Mid1

DIOPT Version :10

Sequence 1:NP_609193.1 Gene:CG8419 / 34118 FlyBaseID:FBgn0031999 Length:921 Species:Drosophila melanogaster
Sequence 2:NP_075216.1 Gene:Mid1 / 54252 RGDID:2640 Length:667 Species:Rattus norvegicus


Alignment Length:699 Identity:132/699 - (18%)
Similarity:225/699 - (32%) Gaps:265/699 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   305 DLKCGICLDVYTDPRTLHCLHSFCLQC----LVSENFKDESLWDQDQARSEEPSNYSLRSEMGGS 365
            :|.|.|||:::.||..|.|.||.|..|    |||.                              
  Rat     7 ELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSH------------------------------ 41

  Fly   366 SAELTATVSPARQRGSSFTLRRKKSMDRLVIRSKSDGKRSTSSIGTRFTGSFASEVSTRCIRCHT 430
                .||..|..                                            |....:|.|
  Rat    42 ----CATNEPVE--------------------------------------------SINAFQCPT 58

  Fly   431 CNYPTDLSLGGVRQLPQNYLLVRRIEVLRLQ----AGEDVIS-----------------RVWCSL 474
            |.:...||..|:..|.:|..|...|:  |.|    :|.:..|                 :|.|..
  Rat    59 CRHVITLSQRGLDGLKRNVTLQNIID--RFQKASVSGPNSPSETRRERAFDANTMSSAEKVLCQF 121

  Fly   475 CTEEIS--ATYHCISCTLNLCTLC-KEAHERQRSTASHRMRSILELRRARKQKQQQMGLGDSSKL 536
            |.::.:  |...|::|.::.|..| |..|..::....||   ::|            .:.||...
  Rat   122 CDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHR---LIE------------PIPDSHIR 171

  Fly   537 VLRCGIHTNFELKAFCTNCRQLACTDC-LVILHKGH-------RHETISRAI-GHQGKLLKEATD 592
            .|.|..|.:.::..:|....||.|..| ||..|:.|       |::.:.:.: .:...|:|..|:
  Rat   172 GLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAALSERYDKLKQNLESNLTNLIKRNTE 236

  Fly   593 ---------QTRPLCQYAEHSIERLNAIARGINDRCDDIQTQVERYMQ----QYMDALTVHRKTL 644
                     ||   ||:.|.:..|..|   .:.:.||.:...::...|    :..:...:..:.|
  Rat   237 LETLLAKLIQT---CQHVEVNASRQEA---KLTEECDLLIEIIQERRQIIGTKIKEGKVMRLRKL 295

  Fly   645 LQQISRARE---------SKVEVVLKQQLDLEKRTQQAMDAVRFSQELCEIGADVEILSYVT--- 697
            .|||:..::         |:.|..||:.           |..||.|....|   .|.:|..|   
  Rat   296 AQQIANCKQCIERSASLISQAEHSLKEN-----------DHARFLQTAKNI---TERVSMATASS 346

  Fly   698 -ILLRRLEYCQQFKP-----PVDPKISDSLHFLPKIRAPSTKDQRDIPLYGIITMQVVEPSLCTL 756
             :|:..:.....|..     ..:.|:.:.|.:|.....|:.:::                 |||.
  Rat   347 QVLIPEINLNDTFDTFALDFSREKKLLECLDYLTAPNPPTIREE-----------------LCTA 394

  Fly   757 EWEGFSQLRLHKKAD-----------LLLHSRDADGVSLCHG------------------GLEIN 792
            .::   .:.:|..:|           ..:.:..|:.||||:.                  ||:  
  Rat   395 SYD---TITVHWTSDDEFSVVSYELQYTIFTGQANVVSLCNSADSWMIVPNIKQNHYTVHGLQ-- 454

  Fly   793 CMLKYKDSSSKFLPVEVSDNRDGTYNISFTPDAQGTLILTITINDRPIKGGPFTFQARQVRPHTG 857
                   |.:|::.:..:.|:.|:.  |..|....|       |.:|.|..|.:...:....|..
  Rat   455 -------SGTKYIFMVKAINQAGSR--SSEPGKLKT-------NSQPFKLDPKSAHRKLKVSHDN 503

  Fly   858 IYHCCSFCSGKGNRNVMCSCEGHMP-GYSGCG-HGHAGH----PGRRHW 900
            :         ...|:...|.:.|.| .::..| :|.||:    .||.:|
  Rat   504 L---------TVERDESSSKKSHTPERFTSQGSYGVAGNVFIDSGRHYW 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8419NP_609193.1 RING_Ubox 304..>345 CDD:473075 16/43 (37%)
Bbox1_TRIM45_C-X 470..514 CDD:380867 12/46 (26%)
Bbox2 539..576 CDD:380814 12/44 (27%)
CC_brat-like 583..703 CDD:475168 30/145 (21%)
Filamin 748..846 CDD:395505 23/126 (18%)
Mid1NP_075216.1 RING-HC_MID1 3..74 CDD:438411 26/144 (18%)
Bbox1_MID1_C-I 115..164 CDD:380894 13/63 (21%)
Bbox2_MID1_C-I 168..214 CDD:380880 13/45 (29%)
CC_brat-like 219..344 CDD:475168 28/144 (19%)
COS 323..374 CDD:465805 11/64 (17%)
FN3 381..481 CDD:238020 19/130 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 471..524 12/70 (17%)
SPRY 485..661 CDD:470632 15/68 (22%)

Return to query results.
Submit another query.