DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8419 and Mid2

DIOPT Version :10

Sequence 1:NP_609193.1 Gene:CG8419 / 34118 FlyBaseID:FBgn0031999 Length:921 Species:Drosophila melanogaster
Sequence 2:NP_001178818.1 Gene:Mid2 / 363502 RGDID:1565674 Length:735 Species:Rattus norvegicus


Alignment Length:713 Identity:135/713 - (18%)
Similarity:241/713 - (33%) Gaps:236/713 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   305 DLKCGICLDVYTDPRTLHCLHSFCLQC----LVSENFKDESLWDQDQARSEEPSNYSLRSEMGGS 365
            :|.|.|||:::.||..|.|.||.|..|    |||.....||:         ||            
  Rat    27 ELTCPICLELFEDPLLLPCAHSLCFSCAHRILVSSCSSGESI---------EP------------ 70

  Fly   366 SAELTATVSPARQRGSSFTLRRKKSMDRLVIRSKSDGKRSTSSIGTRFTGSFASEVSTRCIRCHT 430
               :||                                                      .:|.|
  Rat    71 ---ITA------------------------------------------------------FQCPT 78

  Fly   431 CNYPTDLSLGGVRQLPQNYLLVRRIEVLRLQ--------------------AGEDVIS-RVWCSL 474
            |.|...|:..|:..|.:|..|...|:  |.|                    .|..:.| |:.|..
  Rat    79 CRYVISLNHRGLDGLKRNVTLQNIID--RFQKASVSGPNSPSESRRERTYRPGSAMSSERIACQF 141

  Fly   475 CTEE--ISATYHCISCTLNLCTLCKEA-HERQRSTASHRMRSILELRRARKQKQQQMGLGDSSKL 536
            |.::  ..|...||:|.::.|..|..| |..::...|||:..               .:.|:...
  Rat   142 CEQDPPRDAVKTCITCEVSYCDRCLRATHPNKKPFTSHRLVE---------------PVSDTHLR 191

  Fly   537 VLRCGIHTNFELKAFCTNCRQLACTDC-LVILHKGHR-----------HETISRAIGHQGKLLKE 589
            .:.|..|.|.::..:|.:..||.|..| ||..|:.|:           .:|:...:.:..|...|
  Rat   192 GITCLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQTLEMNLTNLVKRNSE 256

  Fly   590 ATDQTRPL---CQYAEHSIERLNAIARGINDRCDD----IQTQVERYMQQYMDALTVHRKTLLQQ 647
            ..:|...|   ||..|.:.....|   .:.:.||:    ||.:.:....:..:...:..:.|.||
  Rat   257 LENQMAKLIQICQQVEVNTAMHEA---KLMEECDELVEIIQQRKQMIAVKIKETKVMKLRKLAQQ 318

  Fly   648 ISRARE--SKVEVVLKQQLDLEKRTQQAMDAVRFSQELCEIGADVEILSYVT-ILLRRLEYCQQF 709
            ::..|:  .:..|::.|...:.|...||    ||.|....|...|.:.:..: :|:..:.:...|
  Rat   319 VANCRQCLERSTVLINQAEHILKENDQA----RFLQSAKNIAERVAMATASSQVLIPDINFNDAF 379

  Fly   710 KP-----PVDPKISDSLHFLPKIRAPSTKDQRDIPLYGIITMQVV---EPSLCTLE--------- 757
            :.     ..:.|:.:.|.:|.....||.:::.....:..||:..:   |.|:.:.|         
  Rat   380 ENFALDFSREKKLLEGLDYLTAPNPPSIREELCTASHDTITVHWISDDEFSISSYELQYTIFTGQ 444

  Fly   758 ----------WEGFSQLRLHKKADL----------LLHSRDA----DGVSLCH---GGLEINCML 795
                      |..:.::|..|:|..          |.:|.|:    ..:...|   .||:     
  Rat   445 ANFISKSWCSWGLWPEIRKCKEAVSCSRLAGAPRGLYNSVDSWMIVPNIKQNHYTVHGLQ----- 504

  Fly   796 KYKDSSSKFLPVEVSDNRDGTYNISFTPDAQGTLILTITINDRPIKGGPFTFQARQVRPHTGIYH 860
                |.::::.:..:.|:.|:.|      ::.|.:.|   |.:|.|..|.....:....:.|:  
  Rat   505 ----SGTRYIFIVKAINQAGSRN------SEPTRLKT---NSQPFKLDPKMTHKKLKISNDGL-- 554

  Fly   861 CCSFCSGKGNRNVMCSCEGHMP-GYSGCG-HGHAGHPGRRHWSCCGNVLENSECNVANKLLNS 921
                   :..::.....:.|.| .:||.| :|.|           ||:..:|.|:....::.|
  Rat   555 -------QMEKDESSLKKSHTPERFSGTGCYGAA-----------GNIFIDSGCHYWEVVMGS 599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8419NP_609193.1 RING_Ubox 304..>345 CDD:473075 18/43 (42%)
Bbox1_TRIM45_C-X 470..514 CDD:380867 13/46 (28%)
Bbox2 539..576 CDD:380814 12/48 (25%)
CC_brat-like 583..703 CDD:475168 27/129 (21%)
Filamin 748..846 CDD:395505 23/136 (17%)
Mid2NP_001178818.1 RING-HC_MID2 21..90 CDD:438412 27/140 (19%)
Bbox1_MID2_C-I 135..187 CDD:380895 14/66 (21%)
Bbox2_MID2_C-I 193..232 CDD:380881 12/38 (32%)
BBC 239..364 CDD:128778 27/131 (21%)
COS 343..394 CDD:465805 10/54 (19%)
FN3 401..531 CDD:238020 22/144 (15%)
SPRY_PRY_TRIM1 536..705 CDD:293974 15/84 (18%)

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