DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trf and tbp

DIOPT Version :10

Sequence 1:NP_476939.1 Gene:Trf / 34102 FlyBaseID:FBgn0010287 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_956390.1 Gene:tbp / 368882 ZFINID:ZDB-GENE-030616-563 Length:302 Species:Danio rerio


Alignment Length:214 Identity:118/214 - (55%)
Similarity:152/214 - (71%) Gaps:8/214 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 ATSNAAANP------HAALQPQQPVALVEPKDAQHEI--RLQNIVATFSVNCELDLKAINSRTRN 75
            |.|...|.|      ...|.|..|:....|......|  :|||||:|.::.|:||||.|..|.||
Zfish    88 AVSTTTALPGNTPLYTTPLTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARN 152

  Fly    76 SEYSPKRFRGVIMRMHSPRCTALIFRTGKVICTGARNEIEADIGSRKFARILQKLGFPVKFMEYK 140
            :||:||||..||||:..||.|||||.:||::||||::|.::.:.:||:||::||||||.||:::|
Zfish   153 AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFK 217

  Fly   141 LQNIVATVDLRFPIRLENLNHVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRK 205
            :||:|.:.|::||||||.|...|.||||||||:||||||||:||||||||||:||||.||||.|.
Zfish   218 IQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRG 282

  Fly   206 DIMDCLEAISPILLSFRKT 224
            :|.:..|.|.|||..||||
Zfish   283 EIYEAFENIYPILKGFRKT 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrfNP_476939.1 TBP_eukaryotes 50..221 CDD:239952 105/170 (62%)
tbpNP_956390.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 50..81
PLN00062 125..301 CDD:177693 107/175 (61%)
1. /evidence=ECO:0000255 128..204 43/75 (57%)
2. /evidence=ECO:0000255 218..295 51/76 (67%)
Blue background indicates that the domain is not in the aligned region.

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