DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trf and Trf2

DIOPT Version :10

Sequence 1:NP_476939.1 Gene:Trf / 34102 FlyBaseID:FBgn0010287 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_001096905.1 Gene:Trf2 / 31773 FlyBaseID:FBgn0261793 Length:1715 Species:Drosophila melanogaster


Alignment Length:228 Identity:77/228 - (33%)
Similarity:128/228 - (56%) Gaps:13/228 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQFHFKVADAERDRDNVAATSNAAANPHAALQPQQPVALVEPKDAQHE--IRLQNIVATFSVNCE 63
            ||....:.|.:.::..||.....::|....:...||:|     |.:||  |.:.|:|.:|||.|.
  Fly  1240 MQSITVIDDDDEEKKEVAEDEEESSNNAKPIDLHQPIA-----DNEHELDIVINNVVCSFSVGCH 1299

  Fly    64 LDLKAINSRTRNSEYSPKRFRGVI-MRMHSPRCTALIFRTGKVICTGARNEIEADIGSRKFARIL 127
            |.|:.|..:..|.||  :|..|:: |::..|..||.|:.:|::.||||.:|..|.:.:|::||.|
  Fly  1300 LKLREIALQGSNVEY--RRENGMVTMKLRHPYTTASIWSSGRITCTGATSESMAKVAARRYARCL 1362

  Fly   128 QKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNHVHGQFSSYEPEMFPGLIYRM--VKPRIVLLI 190
            .|||||.:|:.:::.|::.|..:.:.|::.|.:..|.:.:|||||:.||:.|:|  ..|:..|.|
  Fly  1363 GKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKATLKI 1427

  Fly   191 FVNGKVVFTGAKSRKDIMDCLEAISPILLSFRK 223
            |..|.|..|.| |...:...::.|.|::..|||
  Fly  1428 FSTGSVTVTAA-SVNHVESAIQHIYPLVFDFRK 1459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrfNP_476939.1 TBP_eukaryotes 50..221 CDD:239952 61/173 (35%)
Trf2NP_001096905.1 PHA03418 <644..732 CDD:177646
DUF5401 <891..>1088 CDD:375164
TLF 1283..1456 CDD:239953 62/175 (35%)
Blue background indicates that the domain is not in the aligned region.

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